Oryzias latipes (Japanese medaka): 101160437
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Entry
101160437 CDS
T02443
Symbol
dcaf13
Name
(RefSeq) DDB1- and CUL4-associated factor 13
KO
K11806
DDB1- and CUL4-associated factor 13
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ola03009
]
101160437 (dcaf13)
04121 Ubiquitin system [BR:
ola04121
]
101160437 (dcaf13)
Ribosome biogenesis [BR:
ola03009
]
Eukaryotic type
90S particles
Other 90S particles
101160437 (dcaf13)
Ubiquitin system [BR:
ola04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
101160437 (dcaf13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sof1
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
eIF2A
Beta-prop_IFT140_1st
KNTC1_N
ANAPC4_WD40
MIOS_WD40
NBCH_WD40
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
101160437
NCBI-ProteinID:
XP_004077650
UniProt:
H2LAM3
LinkDB
All DBs
Position
16:5143645..5158114
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AA seq
445 aa
AA seq
DB search
MKVKVLSRNPDDYVRETKLDIQRVPRNYDPTLHPFEVAREYTRALNATKLERVFAKPFLA
SLDGHRDGVNCLAKHTRSLSTLLSGSCDGEVKVWNLSKRECVRTLQAHEGFVRGMVVRFC
GTSFFTIGDDKTIKQWKMETPGYGEEEEPLHTILGKTVFTGLDHHQKEGVFATCGQQVDI
WDEQRSSPIRSFTWGVDSFSSVSFNPVETDLLGSCASDRSIVLYDMRESAPLKKVIMTMR
SNTLCWNPMEAYYFTCANEDYNLYTYDMRYLEKPLVVHMDHVSAVLDVDYSPTGQEFVSA
SFDKTIRIFPKDAGHSREVYHTKRMQHVICIKWSADSKYILSGSDEMNIRLWKANAAEKL
GVLAPREREAANYSQKLKEKFQNHPQIRRIARHRHLPKSIYHQTKELRVMKDARRRKEMN
VRKHSKPGAVPVVSEKEKHVVTVVK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaaggttaaagtcctttcaagaaacccggatgattacgtccgggagaccaaactagac
attcagcgagtccccaggaactatgaccccaccctccatccttttgaggtggcccgggaa
tacacacgggccctgaacgcaactaagctggagcgagtcttcgccaagcccttcctggct
tccctggatggtcacagagatggggttaactgtctggctaagcacaccaggagcctctcc
acccttctgtcaggctcctgtgatggagaggtcaaagtgtggaatctttccaaacgcgag
tgtgtccgcacactgcaggcacacgaggggttcgtgcgaggaatggtggtcagattctgt
gggacttcttttttcacaattggggatgacaaaacgataaagcaatggaaaatggaaacg
ccgggttatggcgaggaggaggagccacttcacactattttgggaaaaactgtgttcaca
gggctggaccaccaccagaaagagggtgtgtttgcaacatgtggccagcaggtggacatc
tgggatgagcagaggagcagcccgatccgctctttcacctggggagtggacagcttcagc
tctgtcagctttaaccctgtggagacagatcttcttggaagctgcgcttctgacagaagt
atagtcctatatgacatgagagagtcagcaccgcttaaaaaggttattatgactatgagg
tcaaacaccttatgctggaacccaatggaagcttattacttcacatgtgcaaatgaagac
tacaatctgtacacgtatgacatgaggtacctggagaagcccttggtggttcacatggac
catgtctctgcggtgctcgatgtcgactactctcccactgggcaggagtttgtgtccgcc
agttttgataaaaccattcggatcttccccaaggacgccggacacagcagggaagtgtac
cacaccaagcgcatgcagcatgtcatctgcataaagtggtcagcagacagcaaatacatc
ctgagcggatctgatgaaatgaacatcagactgtggaaagccaacgcagctgagaagctg
ggagtgctggctcccagagagagggaagctgcaaactacagtcagaagctaaaggagaag
ttccagaaccatccacaaatccggcgcatcgcccgccacagacacctacctaagagcatc
taccatcagaccaaggaactccgggtcatgaaggacgctcgcagacggaaggagatgaac
gttcgcaagcacagcaagccaggagccgttcctgtggtgtctgagaaggagaagcatgtt
gttacggtggtgaaatag
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