Oryzias latipes (Japanese medaka): 101160447
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Entry
101160447 CDS
T02443
Name
(RefSeq) RANBP2-like and GRIP domain-containing protein 8 isoform X1
KO
K12172
E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03013
Nucleocytoplasmic transport
ola03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101160447
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
101160447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101160447
03110 Chaperones and folding catalysts [BR:
ola03110
]
101160447
04121 Ubiquitin system [BR:
ola04121
]
101160447
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
101160447
Chaperones and folding catalysts [BR:
ola03110
]
Protein folding catalysts
Peptidyl prolyl isomerase
Cyclophilin
101160447
Ubiquitin system [BR:
ola04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
101160447
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ran_BP1
Zn_ribbon_RanBP
IR1-M
Pro_isomerase
WH1
TPR_14
TPR_16
TPR_7
TPR_2
TPR_8
TPR_1
TPR_CcmH_CycH
ARM_TT21_C
TPR_Slam
PPR_1
Motif
Other DBs
NCBI-GeneID:
101160447
NCBI-ProteinID:
XP_023806249
LinkDB
All DBs
Position
21:complement(17102763..17125946)
Genome browser
AA seq
3134 aa
AA seq
DB search
MRRSKVEVDRYVSSVLSTSTALKEKPVKGFLFAKLYLDAKEYELAKRHVSEYLKVQERDP
KAHKFLGHLYEREGELNKAVGCYKRSVDLNPAQRDLVLKVAELLVSKEENDSRAEFWVDK
AAKLLPGSPAVFNLKERLLSRQGQQGWNQLFDLLQAELAARPADPHVNVKLVQLFCQDGR
LDEAVKHCLAAEKRGLLRRSKEWYTVVLRTLQEYLAQPSISSNEKLCRRLQKEVLLTHCN
LLRIALSESDVQPGLDAFRSFDGAMQTLAMAARRQSDDLLEVFVEMRGHLYLHAATLLLK
MAHERQQTWRAVIDLSVMCYLLAYQNPRPKPRVSKRDQSPPLLLELLANDRQSQAGHMLL
SLNPDPSTLIREVVEAFGNHKGQECLFELLWGPQASSSSSFIAIDDIRSLSAITPELSQL
TKYDTGSILLHGGDLQHLSWLGLQWTLQDQRPPLRDWLQQLFPRLTLETSKIDTNAPESI
CLLDLEVFLYGVVFSSHCQLQEKAKMSSGMKKQQELLEPRCLPLSLLCLLTTDRQREWWD
AIYNLIYNRAASGTSAKLRMIVQHGLNTLRAGEKHGLQPALVIHWAQCLSQTGDGMNSYY
DQKEYIGRSVHYWRAVLPLLEKIKCRRSIPEPLEPLFMHFSSKNIQISSVRSYEEEAQIA
HAVLLDIEGRTDEAITILEKINNLSSAWHLAQIHQRLSEEASNGVEETQDRCITSLRKYR
TYLLRIYNANANDIDKLPVSMEEVVDLLNDVNQQLGESGEDEEDEKEFERQIGPDHSSPA
HLQETSATISHIKFSTPSPNKSIVSPSKRLISPKAPPHWVEDQKNLLQMLCQKVEALKNE
VQDLKLNASVAAGSPPKLYGDSYRAEGFQEPFTPVQSYHGAPLTVATTGPSLFYNQSPAY
NSQYLLRPAANVTPTKAPVYGVNRLPPQQHVYAYQQPTHTPPLQTTPACMYPSQEQVFGA
PLRFESPATSLLSPYSEEYFGQSVSQQAPNPPLPEPGYFTKPSVLPVQPPKSLEGPPVDF
GKVPLSQQAPEASRVPSFGVAAQAAPSAAFKFNSNFKSNDGDFTFSASQAKHSESLLGLL
TSDIPTTKDSTPEKPPAQEQPPSIFSFGHKNLTSFSFVDPVQNSVSGGAFGKADQPFKFG
ESPKQLFDISKQVESDNDSAHADEDEDGPHFEPIVPLPDKVDVKTGEEEEEEMFCNRAKL
YRFDAETKEWKERGIGNLKILKHNTKGKVRLLMRREQVLKICANHYITADMLLKPNAGSD
KSWVWNAIDYADEEPKPEQLAIRFKTVEEASLFKAKFEEAKKVALASPEKQPEKKSSSKD
SDSLAARFALKEGDWECDVCCVVNKPSDLRCKACQTANPSSKAEVQAPKASAFTFKFGTD
SSKQSSSGSTFAGFGGFGSSVPSSFTFGMGSSKLPDAATKAISFGSLDDKRSAQWNCEKC
STKNETSADVCLSCKTSKTATKKTVQSSPTAAVQPSAFAPDLSAQFGKKPGQWDCNVCEV
RNESAAERCVACKTAAKKTVQSSPAAAVQPAAAVQPAAFAPDLRAQFGKKPGQWDCNVCE
VRNDSAAERCVACKTAAKKTVQSSPAAAVQPAATVQPAAFAPDLRAQFGKKPGQWDCNVC
EVRNESAAERCVACNTSKAKETATAPVAPSLPPAPEITADSSKVGGQWDCKSCLVRNEAS
ATKCVCCSAPNDTLSLEAIFGKNQGEWDCDACLVRNEASASKCVACQAANPNAKIASSSS
ASTFSFTFGNKSQPSQPAGTGITSSGFQFGLSKEKNSAPPFKFETPQTAPTTTSSSGFSF
SMPIPPGGFKFGLQEPAKDPASSGGPTPPGPASSCLKSIADKHKEKETLSTPPDIKAEQD
ANPLISGKGSLSSFADLAKSSGSDFQFGQTDPNFKGFSGAGQQVFSTPQATPTKMDSVSG
QEDDGMYKTEENDDIQFEPVVQMPDKVDVVTGEEDEQVLYSQRVKLFRFDTSTSQWKERG
VGVLKFLKNSINGRLRVLMRREQVLKVCANHWITTTMNLKPLAGSDKAWIWLANDFSDGD
AKLEQLAVKFKTPELAEEFKAKFEECQRLLLDIPLQTPHKLVDTGRTAHLIQKAEEMKSG
LKDLKSFLTDEKTKIKDEDTQGDTTASGEISSMVIRPHGETTGPTLEWDNYDLRGDALDD
TADSSVYASPIASSPLRKNLFRFGESTGGFSFSFQPGISPSKSPAKLNQSQASVGTDDEQ
DVTQDEERDGQYFEPVVPLPDLVEVSTGEENEQSIFSHRAKLYRFDKDVGQWKERGIGDL
KILQNYDSKRVRLIMRRDQVLKLCANHWISETMKLEPMKGAEKAWVWSAMDFSEDGEGKI
EQLAVRFKLQETANTFKQVFEESKVAQAKAELMTPMASRLAAPKDDTAAELASTPVCGSA
AIAVLEEITKERTEPPPDSKPLPAASPSPINPSKTVVSPPKFVFGTDSLQKIFGSPKSQP
EAPAPAGKAKDSGSSVKSPLPAPAFPMHTGLDFRLFKDNPMAFWTSTSTSDSFEPAGSAQ
AAAGSSRSEEDSEVEVLYVKEPTAEQAALARKLLLPLTFFCYKNEPGYTSDSETDDEDFE
SAVKALNGNLYPDPPQAAASDNDSCEVVWEKRPTPEEEEKAKSLQLPPTFFCGLSTSDTD
TNHDKQEDFETEVRKAQHELAGQSKKAEKSWSRPAAALQDPSSVPASSCPEAAASGTAVE
GQTADQPAESQSSSCPIDLSTKKSSEPEPGSSTDVSDSPAAAQDSSFGFDSLAGFSFADL
AKKTEGFAFGNKDSDFSWANAGAMVFKPPVSCEPKPKTDDGSDEEEAPTNVDIHFEPIVS
LPEVETKSGEEDEEILFKERAKLYRWDRDQSMWKERGIGDIKILFHPNKRFYRILMRRDQ
VLRVCANHTIIQGMELKPLNTTANAVVWTATDYADGEGVVEQLAAKFKTPEIAETFKKTF
CECQSRMSQTDGDASCALSPQMSRVQEHSRETNPQVFLKVAADDEPLGSITIELFSHIVP
KTAENFRALCTGEKGFGLQNSIFHRVVPDFMCQGGDITNSNGTGGKSIYGSSFEDENFDV
RHTGPGILSMANRGRDTNNSQFFITLKKAEHLDFKHVAFGWVRDGMDVVQQMGELGTKQG
VPSKKLVITECGQL
NT seq
9405 nt
NT seq
+upstream
nt +downstream
nt
atgcggcgaagtaaagtcgaagtggaccgttatgtttcttctgttctgagcacctctaca
gctctcaaagagaagccagtgaagggatttttgtttgctaaattgtaccttgatgcaaaa
gaatatgaacttgcaaaaaggcatgtttcagagtatcttaaagtgcaagagagggatcca
aaagcacataaattccttggacacctctacgagagagagggagagctcaacaaggctgtt
gggtgctacaagcgctctgtggatttgaaccccgcgcagagggacctggtcctgaaggtg
gctgagttacttgttagtaaagaggaaaatgacagcagagcagagttttgggtggataaa
gctgcaaagcttttgcccggcagcccagcggtcttcaacctaaaggagcgcctgttgagt
cgccagggtcagcagggttggaaccagttgttcgatcttctccaagccgagcttgcagcg
cggccagccgatcctcacgtaaatgtgaagctggtgcagctgttctgtcaggacgggcgg
ctggatgaagctgttaaacactgcctagcggcagaaaagaggggcctgttgcgccgcagc
aaagagtggtacactgttgtgttgcgcactctgcaggagtatctggctcaacccagcatc
tctagtaatgagaagttgtgtcgacgacttcagaaggaagtgctgttgacgcactgcaac
ctgctgagaatcgcactttctgagagcgacgtgcaacccggcctagatgcatttagaagc
tttgacggtgccatgcagacgctggctatggcagctagacgccaatcagatgatcttctg
gaggtttttgtggagatgagaggtcacctctatctgcatgctgccacactgttgttgaaa
atggctcatgagcgtcagcaaacctggagggctgtcatcgatctgtctgtcatgtgctac
ctgctggcgtaccagaatcccagaccaaagccaagagtgagcaaaagagaccagtcacct
ccactgcttctggagcttctggctaatgatcggcagagtcaagctggacacatgctgttg
agtctgaatccagatccatctactttaatcagagaggtggttgaagcatttggaaaccat
aaaggacaagagtgtctgtttgagctactgtggggtccccaggcttccagcagctcctcc
ttcattgccatagacgacatacggtcactaagcgctatcactcctgagctctcacagctc
actaaatatgacactggctccatcctgctgcacggtggagatttgcaacatctgagttgg
ttggggctgcagtggactctccaagaccaaagaccacctctgagggactggctgcagcag
ctttttcccagactcactctggaaacctctaagatagacaccaatgcaccagagtccatc
tgccttctggatctagaggtgtttttatacggtgtggtgttcagcagccactgtcagctg
caggagaaggcaaagatgagcagtggcatgaagaagcagcaggagctcctggagcctcgc
tgcctgcctttgtctctgctctgcctcttgaccacagacagacagagagaatggtgggat
gccatatacaaccttatatacaaccgagcagcttctggcacgtcagccaagctgcggatg
attgtgcagcacggtctcaacaccctgagagctggagagaaacacggcctccagcctgcg
ctggtcatccactgggcccagtgcctcagtcagacgggtgatggcatgaactcgtactac
gaccagaaagaatacatcgggcgcagtgtccattactggagagctgttctccccctgctg
gagaaaatcaaatgcagaagaagtataccagagcccctcgagcccctcttcatgcacttc
tcttctaaaaatattcagatttcttcagtgagaagttatgaggaagaagctcagatagcg
cacgctgttctgcttgacatagaaggaagaacagatgaagcaatcaccatcttggagaaa
atcaacaacttgtcatctgcctggcatttagcacagatccatcagcgactgtcagaagag
gccagcaatggtgtggaagagactcaagaccgctgtataacttctctgagaaaatacaga
acatatctgctacggatctacaatgccaatgcaaacgacatcgacaagctccctgtatcc
atggaggaagttgtcgacctcctgaatgatgtaaaccaacagctgggggagagtggggag
gatgaggaggatgagaaggagtttgagcgtcaaataggaccagatcactccagtcccgct
catctccaggaaaccagcgccaccatttctcacatcaagttctccactccatctcctaac
aagagcatcgtatctccttccaaacgtttgatttctccgaaggcaccacctcattgggtc
gaagaccaaaaaaatctcctgcagatgttgtgccagaaagttgaagctctgaagaatgag
gttcaggatctaaaactcaacgcatcagtggctgcaggttctcctcctaagttgtatgga
gacagctacagggctgagggttttcaggaaccatttacgccagtccagtcttatcacgga
gcccccctaacagtggctaccactggcccctctctgttctacaaccagtctccagcttac
aactcccagtatctcctgcggcctgctgcaaatgtgacccccaccaaggctccagtttat
ggtgtgaaccgtctgccccctcagcagcatgtgtatgcataccagcagcccactcacact
ccccccttgcaaacgactccagcgtgcatgtacccttcccaggagcaagtgtttggcgct
ccccttcgctttgaatctccagccaccagccttttgtccccttatagtgaggagtatttc
ggccagagtgtttcccaacaggctcccaacccccccctcccagaacctgggtacttcacc
aagccgtccgtgcttcctgtgcagccgcccaagagcttggaggggccgcctgtagatttt
ggaaaggtcccactgagccagcaggctcctgaagcctctagagtgcccagttttggtgta
gctgctcaggctgcaccctcagctgcttttaagtttaactccaactttaagtccaacgat
ggagacttcacattctccgcttcacaggcaaagcacagcgaaagtttactgggattgtta
acatctgacatccccacaactaaagactctactccagagaagcctcccgcccaggagcag
ccccccagcatcttcagcttcggccacaaaaacctgaccagcttctcttttgttgatcct
gtacagaactctgtaagcgggggggcttttggcaaggcggatcagccctttaaatttggg
gagagccccaagcagctgtttgatatctccaaacaggtagagagtgacaatgacagcgca
cacgcagacgaggacgaagacggaccccacttcgagccgatcgttcctctccctgataag
gtggatgtgaaaacgggcgaagaagaggaggaagaaatgttttgcaacagggccaagttg
tacaggtttgacgcagagacaaaggagtggaaagaacgtggaatcggcaatctaaaaatc
ttaaaacacaacacaaaagggaaggttcgtctgttgatgagaagggagcaagtcctaaag
atatgtgccaaccactacatcactgctgacatgcttctcaaaccgaatgctggctctgac
aagtcctgggtgtggaacgccatcgactacgccgacgaagagcctaaacccgagcaactg
gccatccgcttcaaaacggttgaggaagcgtctctttttaaagccaaatttgaagaggct
aagaaagtggctctcgcatccccagaaaagcagcctgaaaagaagagcagctccaaagat
tcagattccctggcagctcggtttgctctgaaagaaggggactgggagtgcgacgtgtgc
tgtgtcgtaaataaaccctctgatctgcgctgcaaagcctgccaaacagccaacccttcc
tcaaaagcagaggtccaggctcctaaagcaagcgcttttactttcaaatttggtacagac
tcgtcaaaacagagcagctctggctccacgtttgctggatttggtggttttgggtcttct
gttccttcttcgtttacatttggcatgggctcttcaaagctccctgatgcagccaccaag
gccataagttttggctctttggatgataaaaggtcagctcagtggaattgtgagaaatgt
tctacaaaaaatgagacctctgcagacgtttgtctttcttgtaaaacttctaaaaccgca
accaaaaagacagttcaaagcagcccgactgcagcagtgcagccgtctgcgtttgcccct
gatctgagcgctcagtttggcaaaaagcctggacagtgggactgcaacgtttgtgaagtg
aggaatgagtctgccgctgaaaggtgtgttgcctgtaaaaccgcagccaaaaagacagtt
caaagcagcccggctgcagctgtgcagccggctgcagctgtgcagcctgctgcgtttgcc
cctgatctgagggctcagtttggcaaaaagcctggacagtgggactgcaacgtttgtgaa
gtgaggaatgattcggccgctgaaaggtgtgttgcctgtaaaaccgcagccaaaaagaca
gttcaaagcagcccggctgcagctgtgcagccggctgcaactgtgcagcctgctgcgttt
gcccctgatctgagggctcagtttggcaaaaagcctggacagtgggactgcaacgtttgt
gaagtgaggaatgagtctgccgctgaaaggtgcgttgcctgtaacacctcaaaggcaaaa
gagacagccacagctcctgtggcaccaagtttgccgcccgcgccagaaataacagccgat
tcaagcaaagtaggtgggcagtgggactgcaagagctgcctggtcagaaacgaagcatct
gccaccaaatgtgtttgctgcagcgcccccaatgacactctctccttggaagccattttt
ggcaagaatcaaggagaatgggattgtgatgcatgcttggtgagaaacgaagcctctgct
agcaagtgtgtcgcctgtcaggctgctaatcctaatgctaaaatcgccagcagctcctct
gcctccacctttagcttcacctttggaaacaagagtcaaccaagtcaacctgccggaact
gggatcacctcttctggattccagtttggtctgagcaaagagaaaaactctgctcctcct
tttaagtttgaaactcctcagactgcacccaccaccacaagttcctctggcttttctttc
tccatgcccattccacccggaggcttcaagttcggccttcaggaacctgcaaaggaccct
gcctcgtccggtggtccgacaccacccggaccagcctccagctgtctgaaaagcattgcg
gacaaacacaaggagaaagaaactctgtccacacccccagacatcaaagcagaacaagac
gccaatccactcatttctggaaagggcagtttgtccagttttgctgacttggccaaatcc
tctgggagcgacttccagtttggacagacggaccccaactttaaaggcttttctggagcc
gggcagcaggtcttctcaacgccacaggcaacacccaccaagatggactctgtgagcgga
caagaggatgacggcatgtataagactgaagaaaacgatgacatccagtttgaaccggtg
gtccaaatgcccgacaaggtggatgtggtcacgggagaggaagacgagcaggttctctat
tctcagcgggtcaaactgttccgctttgatacaagcaccagccagtggaaagagcgaggg
gttggggtcctcaaattcctgaaaaacagcatcaacggtcgcctgagggtattgatgagg
agggagcaagttctgaaggtgtgtgccaaccactggatcacgaccacaatgaacctgaag
cccctggcaggttcggacaaagcctggatttggttggccaatgacttctctgacggagac
gccaagttggagcagttggctgtcaaatttaaaactccagagctcgcagaggagttcaag
gcaaagtttgaggaatgtcaaagactcctcctggacatccccctgcaaactccacacaag
ctggtcgacacaggcagaacggctcacctcattcagaaggcagaggaaatgaaatctggt
ttaaaagacctgaaatcatttctgacggatgaaaaaaccaagatcaaagatgaagacacg
caaggagacacgacggcttccggcgagatttccagcatggtcatcaggcctcatggggaa
accaccgggccgaccttggagtgggataactatgacctgagaggagacgctctggatgac
acagctgactcctctgtttatgcctcgcccattgccagcagccccctgagaaaaaacctt
ttccgcttcggagaatccaccggtgggttcagcttcagcttccagcctggcatcagcccc
tccaaatctcccgctaagctcaaccagagccaagcctcagtaggcactgatgacgagcag
gacgtcactcaggatgaagagcgggacgggcagtactttgaacccgtggtgcctttaccg
gacttggtggaggtttctaccggagaggaaaacgagcagtcgatcttcagccacagagca
aagctgtatcgcttcgacaaagatgtgggtcagtggaaggagagggggatcggagacctg
aagatcttgcagaattatgacagcaaacgggtgaggctgatcatgaggagagaccaggtg
ctgaagctctgtgccaaccactggatctcagaaaccatgaagctggagcccatgaaggga
gcagagaaggcctgggtctggagtgccatggacttttctgaggatggggagggcaaaatc
gaacagctggctgtgaggttcaagctccaagaaacagcaaataccttcaaacaggtcttc
gaagagtccaaagtcgctcaagcaaaagcagaactgatgactccaatggcgtctcggctc
gcagcgcctaaagacgacacagcagcagaattggcaagcactccggtgtgtggcagtgcg
gctattgctgttctggaggagatcacaaaggagcgcacagaacctcctcctgacagcaaa
ccgttacctgctgcctctccgagtccaatcaacccctcaaagactgtggtgtctccccca
aagtttgtctttgggaccgattccctccagaagatattcggctcaccaaaatcccagccg
gaagctccagctcctgcagggaaagcgaaagattctggaagctctgtgaagagtcctctt
cctgctcctgcattcccgatgcacacaggtctggattttaggcttttcaaagataaccca
atggctttttggaccagcacgtccaccagcgacagttttgaacccgcaggttctgctcag
gcagcagcgggcagctcacggtcggaggaagactctgaggtggaggttttgtatgtcaag
gagcccactgctgagcaggcggctttagccaggaaactcctgctgcccctcacctttttc
tgctacaagaacgagccaggttacaccagcgacagtgagaccgacgatgaagactttgag
tcagcagtaaaagcgttaaatggaaacctctacccggatcctcctcaggctgcagcttct
gataacgactcctgtgaggtcgtgtgggagaaacggccaacgccagaagaggaggagaaa
gcaaagagtctgcaacttccccccacgttcttctgtggcctgagcacctctgacactgac
accaaccacgacaagcaggaagactttgaaacagaagtccgcaaagcacagcatgagctg
gctggtcagtcaaagaaagctgagaaaagctggagccgtccagctgcagctcttcaagac
ccgagctcggtcccagcatccagctgtccagaagcagccgccagcggaaccgcagtggag
gggcagaccgcagaccagccagcagaaagtcaaagcagcagctgtcccatcgacctgtcc
accaagaagagctcagaaccagaacccggttctagtacagatgtttctgactctccagca
gctgctcaagactccagctttggttttgactcactcgctggattctcttttgctgacttg
gcaaagaaaacagaaggctttgcgtttggaaacaaagattctgacttctcctgggccaat
gctggggcaatggtattcaaacctcctgtgtcctgtgaacctaaacccaagacagacgat
ggaagtgatgaagaggaggctcctaccaatgtggacattcactttgagcctatagtgtct
ctgcctgaggtggagaccaagtccggagaggaagatgaggagatcttgtttaaggaacga
gccaagctttaccggtgggaccgagaccaaagcatgtggaaggagcgaggcatcggcgac
atcaaaatcctcttccaccccaacaaacggttctatcgaatcctgatgagacgagaccaa
gtcctgagggtttgtgccaaccataccatcatccagggaatggagctaaagcctttgaac
accacagctaatgccgtggtctggactgccacagactacgcagatggtgaaggcgttgtg
gagcagctggcagccaaattcaaaaccccagagattgcagagacctttaaaaagaccttc
tgcgagtgccagagccgcatgagtcaaactgacggtgacgcttcatgcgccttgtcacca
cagatgtccagagtccaggagcactctagagagaccaacccacaagtgttcctcaaagta
gctgctgatgacgagccgctcggctccatcaccatagagcttttctcccacattgttccc
aagactgctgagaacttcagagccctctgcaccggcgagaaaggctttggccttcagaac
tccatctttcacagggtcgtaccagatttcatgtgtcagggtggtgatatcaccaacagc
aacggcacagggggcaagtccatctacgggagctcgtttgaggacgagaactttgacgtt
cgccacacaggtccagggatcctgtcgatggcaaatcgaggacgcgacaccaacaattcc
cagttctttataacgctgaaaaaagcagaacacctggacttcaaacacgtggcgtttggc
tgggttcgggacggcatggatgttgttcagcagatgggagagctgggcacaaagcaaggg
gttccctctaagaagctggttatcacagagtgtggacagctgtag
DBGET
integrated database retrieval system
