Oryzias latipes (Japanese medaka): 101160619
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Entry
101160619 CDS
T02443
Symbol
vps16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog isoform X1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04140
Autophagy - animal
ola04148
Efferocytosis
ola05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
101160619 (vps16)
04148 Efferocytosis
101160619 (vps16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
101160619 (vps16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ola04131
]
101160619 (vps16)
Membrane trafficking [BR:
ola04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
101160619 (vps16)
Hops complex
101160619 (vps16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
NMD3_OB
Motif
Other DBs
NCBI-GeneID:
101160619
NCBI-ProteinID:
XP_023805330
LinkDB
All DBs
Position
2:25141550..25168508
Genome browser
AA seq
1084 aa
AA seq
DB search
MAFVTASWNPLGEAFYRKVELYEMCWSIRDGLRDSLVAAAPYGGPIALLREPLRRSPSSR
PQLEIYSASGAAIASFPWKSGPVVQLGWSISDELLCVQEDGSVLIYDLFGSFKRHFSMGQ
EVVQSQVLEAKVFHSPYGTGIAIVTGSSRFTLATNIEDLKLRRLPEVPGLQGRPASWVVL
TQDRQTKVLLSIGPELYILDNTSCTAVCPPGLSPHAGSIVHMSVSFSYKYLSLFTDSGHL
WAGLSNLQDKLLEFDTKTTERPKQMLWCRRPKSQQPSVVLMWDRLLLVVGECNDTIQFPV
EDPSVLVGEMDGVRIINSTNQELLQEVPLVCQDIFKIASMAPGALLLEAHREYEKSSQKA
DEYLREIKEQNVLEEAVRQCVEAAAHEYDPATQKSLMRAASFGKCFLTDFCSDPFVSTCR
ELRVLNAVRESGVGMPLTHTQFKQMTLQVLIDRLLFRQFYPLAIEICRYLKIPDYQGVSR
VLKHWASCKVQQKDLSDEAIARAVCVKVGESPGVSYSHIAAKAYECGRTELAIKLLDFEP
RSGEQVPLLLKMKRSHLALSKAVESGDTDLVYMVVTHLKNEMNRGDFFMTLRNQPVALSL
YRQFCKLQEQETLKDLYNQDDNHQELANYYVTASYREKSSPVFSPVLLTCVSHLWFSPLF
SPVVLTCGPHLCFHLRSSPAVLTCGSHLCFHLWSSPVVLTFGSHLCFHLWFSPVVLTCGP
HLRSSPAVLTCGPHLRSSPVVLTCGPHLCFHLWFSPVVLTCGPHLWPSPVFSPVVLTCGP
HLWSSPVVLTCGSHLWPSPVALTCGPHLRSSPVVLTCGPHLRSSPVVLTCVLTCVLICVL
TCVFTCGPHLWSSPVFSPVVLTCGPHLCSSPVVSPVFSPAVLTCVSHLRSSPVFTPVVLT
FVLTCGPHLWSSPVALTCVFTCGSHLWFSPVVLTCGPHLWPSPVFSPAVLTCGPHLCFHL
WFSPVVLTCGPHLWFSPVFSSVFSPVFSPAVLTCGPHLCFHLWFSPVVLTCAPHLWFHLC
SHLRSSPVFLTCGLHLCSHLWFSPLFSPVVLTCGPHLWSSPVFSPVVLTCVLICVPHLCS
HLWS
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcgtcacggccagctggaacccgctgggggaggccttttaccggaaggtggag
ctctatgagatgtgttggagcattcgagacggccttcgggacagtctggtggctgcagcg
ccgtacggtggacccatagctctcctcagggaaccccttagacggtctccaagttctcga
cctcagctggagatctactcggcctcgggcgctgccatcgccagctttccttggaagagt
gggcctgtggtccaactgggctggtccatcagcgatgagctgctgtgtgttcaggaggac
ggctcggttctgatctacgatctgtttggatccttcaaaagacacttcagcatgggacag
gaagtggtccagagtcaggtgttggaggccaaggtgttccactctccttatggcacaggt
attgccatagtaacaggctcctcccgcttcaccttggctacaaacattgaggatctgaaa
ctgcggaggttacctgaggttccaggtttacagggaagaccggcctcctgggttgtcctc
actcaggacagacagaccaaagtcctgctgtccatcggaccagaactctacatcctggat
aacacgtcctgcaccgctgtgtgccccccaggcctgagtccccatgcgggcagcatcgtg
cacatgagcgtgtctttcagctacaagtacttgtccctcttcacagactctggacacctg
tgggcggggctttctaacctacaggacaaactcttggaatttgacaccaagacgacagaa
agacccaaacagatgctgtggtgtcgcaggccgaagagccagcagccgtcggtggtgttg
atgtgggacagactgctcctagtggtcggagagtgtaatgacaccatccaattccctgtt
gaggacccgtctgttttggtgggggagatggacggagttcggatcatcaactccaccaat
caggagctgctgcaggaggtccctctggtctgccaggatatcttcaagatcgcctccatg
gcgcctggagctctgctgctggaggcccaccgggagtatgagaagtccagccagaaagct
gacgagtacctgagggagatcaaggagcagaacgtgctggaggaggcggtgcgacagtgt
gtggaggccgcggctcacgagtacgaccccgccacccagaagtccctgatgagggcggcg
tcctttgggaagtgtttcctgacggacttctgctccgatcccttcgtgtccacttgcaga
gagctgcgagtgctgaacgctgttagagagagcggcgtgggaatgccactcacacacact
caattcaagcagatgacattgcaggtgctgattgacaggttgttgtttcgacagttctac
ccgttagccattgagatctgccgttacctgaagattcccgactatcagggcgttagcaga
gtcctgaagcactgggcctcctgtaaggtgcagcagaaagacttgtcggatgaagccata
gcgcgagcggtgtgtgtgaaggtgggggaatcacctggagtctcgtactctcatatcgcc
gccaaagcttacgaatgtggacgcaccgaactcgccatcaagctcctggactttgaacct
cggtctggagaacaggttcctctactgctgaagatgaagaggagtcatctggctctcagc
aaggctgtagagagtggagacacggacctcgtttacatggtggtcacacacctgaagaat
gagatgaacagaggggatttcttcatgactctgaggaaccagccggtggccctcagcctc
tacagacagttctgtaagcttcaggaacaggagactctgaaagacctctacaaccaggac
gacaaccatcaggagctggccaactactacgtcactgcgtcctacagagaaaagtcctca
cctgtgttttcacctgtgctcctcacctgtgtttctcacctgtggttctcacctttgttt
tcacctgtggtcctcacctgtggccctcacctgtgttttcacctgcggtcctcacctgcg
gtcctcacctgtggttctcacctgtgttttcacctgtggtcctcacctgtggtcctcacc
tttggttctcacctgtgctttcacctgtggttctcacctgtggtcctcacctgcggtcct
cacctgcggtcctcacctgcggtcctcacctgcggtcctcacctgcggtcctcacctgtg
gtcctcacctgtggccctcacctgtgttttcacctgtggttctcacctgtggttctcacc
tgtggtcctcacctgtggccctcacctgtgttttcacctgtggtcctcacctgtggtcct
cacctgtggtcctcacctgtggtcctcacctgtggttctcacctgtggccctcacctgtg
gccctcacctgcggtcctcacctgcggtcctcacctgtggttctcacctgtggtcctcac
ctgcggtcctcacctgtggttctcacctgtgttctcacctgtgttctcatctgtgttctc
acctgtgttttcacctgcggtcctcacctgtggtcctcacctgtgttttcacctgtggtt
ctcacctgtggtcctcacctgtgctcctcacctgtggtttcacctgtgttctcacctgcg
gtcctcacctgtgtttctcacctgcggtcttcacctgtgttcacacctgtggttctcacc
tttgttctcacctgtggtcctcacctgtggtcctcacctgtggccctcacctgtgttttc
acctgtggttctcacctgtggttctcacctgtggttctcacctgtggtcctcacctgtgg
ccctcacctgtgttttcacctgcggtcctcacctgtggtcctcacctgtgttttcacctg
tggttctcacctgtggtcctcacctgcggtcctcacctgtggttctcacctgtgttctca
tctgtgttctcacctgtgttttcacctgcggtcctcacctgtggtcctcacctgtgtttt
cacctgtggttctcacctgtggtcctcacctgtgctcctcacctgtggtttcacctgtgt
tctcacctgcggtcctcacctgtgtttctcacctgcggtcttcacctgtgttcacacctg
tggttctcacctttgttttcacctgtggtccttacctgtggccctcacctgtggtcctca
cctgtgttctcacctgtggttctcacctgtgttctcatctgtgttcctcatctgtgttct
cacctgtggtcctaa
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