Oryzias latipes (Japanese medaka): 101161161
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Entry
101161161 CDS
T02443
Symbol
usp39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2 isoform X1
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101161161 (usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ola03041
]
101161161 (usp39)
Spliceosome [BR:
ola03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
101161161 (usp39)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
101161161
NCBI-ProteinID:
XP_004072409
UniProt:
A0A3P9MFC1
H2LPG3
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All DBs
Position
9:12333823..12339948
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AA seq
488 aa
AA seq
DB search
MSLKREREEIEDDEDNEDEVTVKFRRGRVVEDRRSRHCPYLDTINRSVLDFDFEKLCSIS
LSHINVYACLICGKYFQGRGQKSHAYTHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLE
DITYVLKPTFTKQHIEGLDKHGKLYRAYDGTTYLPGIVGLNNIKANDYANAVLQAFSNVP
PLRNYFLEEENYRDIRRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCS
KKNFQITKQGDAVDFMTWFLNAMHGALGGTKKKPSILTKVFQGSMRIFSKKLPHPDLPPE
EKEALLVTEEYQEQMSESTFLFLTLDLPTAPLYKDEKEQLIIPQVPLFNILGKFNGSTEK
EYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLREYLTEEA
QATEKNTTYDLIANVVHDGKPTEGSYRIHVLHHGTGKWYEMQDLQVTDILPQMITLSEAY
IQIWKRQD
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgtctttaaagcgtgaaagggaggaaatagaagacgacgaggataacgaagacgaagtg
acagtcaaatttaggcgaggacgtgtggttgaagaccgaagaagccgccattgtccttac
ctggacaccataaacaggagtgttctggattttgactttgagaagctctgctccatttct
ctgtctcacattaatgtttatgcctgtcttatttgtgggaaatactttcaaggcagaggt
cagaagtctcatgcctacactcacagtgtccagttttctcaccatgtgttcctcaacttg
cacacactcaagttttactgtctgccagacaactatgagatcattgactcatcgctagaa
gacatcacatatgtgctgaagccgactttcaccaagcagcacattgagggtctggacaaa
catggtaaactgtacagagcctacgatggtacaacctacctgccagggattgtagggctt
aataacattaaagccaacgactatgccaatgctgtactacaggctttttccaacgtccca
cctttgcgaaactacttccttgaggaggagaactacagagacatccggaggccaccaggg
gacatcatgtttctgctggtgcagcggtttggggagctgatgcgcaaactttggaatccg
agaaacttcaaggcccacgtgtcgccccacgagatgctgcaggctgtagtcctgtgcagc
aagaaaaacttccaaatcaccaaacaaggtgatgctgtggacttcatgacatggttccta
aacgccatgcatggcgctcttggaggcacaaagaagaagccatcaattcttacaaaagtc
tttcaaggctccatgaggattttctccaagaaactaccacatccagatttacctccagag
gaaaaggaggcgttgcttgtaacagaggagtaccaggagcagatgtccgagtctaccttc
ctgttcctgacccttgacctcccaacagctcctttgtacaaagatgagaaagagcaactt
attattccacaggttcctctcttcaacatcctgggcaaatttaatggcagcacagagaag
gaatacaaaacctacaaagagaattttctcaaaaggttccagctgactaaattgccccct
tatctcatcttttgcatcaaaagattcaccaagaacaatttctttgtggagaagaacccg
actatcgtaaactttcccattacgaatgtggacctgcgtgaatatctgacagaagaagct
caggccacagaaaagaacacaacttatgatctgattgcaaacgttgtgcatgatgggaaa
cccactgaggggtcgtacagaattcacgttcttcatcatggaacagggaagtggtatgag
atgcaggatctgcaagtaacggacattctcccccagatgatcacactgtcagaggcgtac
atccagatctggaagagacaagattga
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