Oryzias latipes (Japanese medaka): 101161213
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Entry
101161213 CDS
T02443
Symbol
smarca5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101161213 (smarca5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ola03021
]
101161213 (smarca5)
03036 Chromosome and associated proteins [BR:
ola03036
]
101161213 (smarca5)
Transcription machinery [BR:
ola03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
101161213 (smarca5)
Chromosome and associated proteins [BR:
ola03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
101161213 (smarca5)
RSF complex
101161213 (smarca5)
WICH complex
101161213 (smarca5)
B-WICH complex
101161213 (smarca5)
NORC complex
101161213 (smarca5)
BRF complex
101161213 (smarca5)
NuRF complex (fruit fly)
101161213 (smarca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
DBINO
Myb_DNA-binding
AAA_14
Motif
Other DBs
NCBI-GeneID:
101161213
NCBI-ProteinID:
XP_023813331
UniProt:
A0A3B3HX99
LinkDB
All DBs
Position
1:18167655..18175449
Genome browser
AA seq
1039 aa
AA seq
DB search
MSESTTCAEQREENTELEEEQEAGGAEEEKSDSSDAGKESSSDAGPDGQDASSSSSTKTK
EDAPGYEEKVQTDRTNRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQN
LLSAGDNRHRRTEQEEDEELLNESTKTTNVCTRFDDSPSYVKAGKMRDYQVRGLNWLISL
YENGINGILADEMGLGKTLQTIALLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPS
LRAVCLIGDRNERTALIRDVLLPGEWDVCVTSYEMLIIEKAVFKKFNWRYLVIDEAHRIK
NEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDSWFDTNNC
LGDQKLVERLHTVLRPFLLRRIKADVEKTLLPKKEVKIYVGLSKMQREWYTKILMKDIDI
LNSAGKMDKMRLLNVLMQLRKCCNHPYLFDGAEPGPPYTTDLHLVVNSGKMVVLDKLLPK
MKVQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHEERQISINAYNEPNSTKFI
FMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQQKQVRVFRFITENTVE
ERIVERAEMKLRLDSIVIQQGRLVDPSANKLGKDEMLSIIRHGATHVFASKDSEITDDDI
DAILERGERKTMEMKEKLSSLGESSLRNFTMDTENSSVYTFEGEDYREKKKVITNWIEPP
KRERKANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRK
TIGYKVPRNPDLPNSAQVQKEEQAKIDEAEALSEEELEEKENLLQQGFTIWNKRDFNQFI
KANEKWGRDDIENIAREVEGKSPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRR
ISIKKALDSKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKESVYDELR
QCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEREKAEKKKRGPKTGSAQ
KRKAEGTSDGRGRRKKLKL
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaagtactacctgcgccgagcagcgggaagagaatactgaacttgaagaagaa
caagaagccgggggagcagaagaggaaaagtctgactcttcagatgccggaaaggagtcc
tcctcagatgctggtcctgatggacaagatgcatcctcctcctcatcgaccaaaactaaa
gaagatgctccaggttatgaagagaaggtgcaaacagaccggaccaacagatttgaatat
ctgttgaagcagacagagttgtttgctcatttcattcaaccggctgcacaaaagacgccc
acctcccctctgaaaatgaaaccaggccgtcctcggatcaaaaaagacgagaaacagaat
ttgctgtctgctggggataaccgccatcgccgcacagagcaagaggaggacgaagagctt
ctcaacgagagcacaaagaccacaaatgtctgcacccgctttgacgattccccctcatat
gtaaaagctggaaaaatgagggactatcaggtccgtggtctcaactggctgatttctttg
tatgagaacggaatcaacggcattcttgcagatgaaatgggtttgggaaagactctccag
accattgccctgctgggttacatgaagcactacagaaacatccccggtccccacatggtt
ctggtccccaagtccaccctctacaactggatgaacgagtttaagcgatgggtgccttct
ctccgtgcagtctgtctgatcggagacagaaacgagcgaacggccctgatcagagatgtg
ctgctgccaggagagtgggacgtctgtgtaacgtcctacgaaatgctcatcatcgaaaag
gcggttttcaagaagtttaactggagatacctggtcatcgatgaagctcacaggatcaag
aatgagaagtcaaagctctctgaaattgtgcgtgagtttaaaaccactaaccgactgctt
ttgactggcactcctcttcaaaataacctccatgaactgtgggctctgctcaacttcctg
cttcccgacgtctttaattcatcagaggattttgattcatggtttgacacaaacaactgc
ttgggtgaccaaaagctggtcgaacggcttcacactgtgttgcggccctttttgctgcgt
cgtatcaaagcagacgtagagaagactctgctacccaaaaaagaggtcaagatctatgtg
ggcctgagtaagatgcagagagaatggtacacaaagattctcatgaaggacatcgacatc
ctgaactctgctggaaaaatggacaagatgcgcctgctgaacgtcctcatgcagctgagg
aagtgctgcaaccatccctacctgtttgatggggctgagccaggcccaccgtacaccacc
gatctccacctggtggtgaacagtggcaagatggtggtgctggacaagctgctgcccaag
atgaaagtgcagggttctcgcgtgcttatcttcagtcagatgaccagggtgctggacatc
ttggaggactactgcatgtggaggaactatgaatactgtcgtcttgacgggcagactccc
catgaggaacggcagatttccatcaatgcgtacaatgaacccaacagcaccaagttcatc
ttcatgctgagcaccagggctggagggttgggtatcaacctggctacagcagatgtggtc
atcctgtacgactctgactggaaccctcaggttgacctgcaggctatggaccgagctcac
aggattggtcagcagaagcaggtgcgtgttttccgtttcatcactgaaaacactgtggag
gagaggattgtggagagggctgagatgaagctgcgcttggactccattgtcatccagcaa
ggaagacttgtagatcccagtgcaaacaaactggggaaggatgagatgctgtccattatc
cgtcacggcgccacacacgtgtttgcttccaaagacagcgagataacggatgatgacatc
gatgccattctggagcgtggtgaaaggaagactatggagatgaaagagaaactttcttct
ctgggggagagctctctgagaaacttcaccatggacacagagaacagcagcgtgtacaca
tttgaaggggaggactacagagagaagaagaaggtcatcaccaactggattgaaccaccg
aagagagaacggaaagccaactatgctgtggatgcctatttcagagaggctctccgagtc
agtgagcccaaggctccaaaggctcctcggccccccaagcaaccaaatgtccaggacttt
cagttcttccccccacgtctctttgagcttttagaaaaagaaattttgtactacagaaag
acaataggatataaggttccacggaacccagatctgcccaactccgctcaggtccagaaa
gaggagcaggccaagatcgacgaggctgaggctctcagcgaggaagagctggaggagaaa
gagaaccttctgcagcagggatttacaatttggaacaaacgggacttcaaccagttcatc
aaagccaatgaaaagtgggggcgggatgatattgagaacattgccagggaagttgagggg
aaatctccagaggaagtgatggaatattcagctgtattctgggagcgatgcaacgagctg
caggatattgaaaagatcatggcccagatagaaagaggagaagctcggattcagaggagg
attagcatcaaaaaggctctagattcaaagatcgggcgctacaaggctcccttccatcag
ctcagaatctcctacggcaccaacaaagggaagaactacaccgaggaggaggaccgcttc
ctcatctgtatgcttcacaagctgggctttgacaaggagagcgtgtacgatgagctccgt
cagtgcatccggaactcgcctcagttccgctttgactggttcctcaaatccaggactgcc
atggagctccaaaggcgatgcaacactctgatcacactgatagagagggagaacatggag
ctggaggagagggagaaggcggagaagaagaagcggggaccaaagacgggttcagcacaa
aaacgaaaggcagagggaacatctgatggtcgggggcgcaggaaaaaactcaaattgtaa
DBGET
integrated database retrieval system
