KEGG   Oryzias latipes (Japanese medaka): 101161413
Entry
101161413         CDS       T02443                                 
Symbol
cul4b
Name
(RefSeq) cullin-4B
  KO
K10609  cullin 4
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola03420  Nucleotide excision repair
ola04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ola00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    101161413 (cul4b)
  09124 Replication and repair
   03420 Nucleotide excision repair
    101161413 (cul4b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ola04121]
    101161413 (cul4b)
   03400 DNA repair and recombination proteins [BR:ola03400]
    101161413 (cul4b)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ola04147]
    101161413 (cul4b)
Ubiquitin system [BR:ola04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     101161413 (cul4b)
DNA repair and recombination proteins [BR:ola03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      101161413 (cul4b)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      101161413 (cul4b)
Exosome [BR:ola04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   101161413 (cul4b)
SSDB
Motif
Pfam: Cullin Cullin_Nedd8 SecA_SW
Other DBs
NCBI-GeneID: 101161413
NCBI-ProteinID: XP_011478226
LinkDB
Position
10:complement(9794028..9808225)
AA seq 860 aa
MFPTGLSSPNPPPQPTQEARPAATDVKNGSGNITSPKKRKINGSERGDTSDTISSSPPKP
LNPSSSGSPTALHIQKKLRFEDSVDFIGLDVKMAEEAAAANAASSCSNNKSKAMFLAGGV
GHHANGLTKTAGSGTFSSSKPGAAKKLVIKNFREKPKLPENYTQETWQKLKEAVEAIQNS
TSIKYNLEELYQAVENLCFHKVSAKLYKQLRAACEDHIKAQIDQFREDALDSVLFLKKID
KCWQDHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRFYIISDLKVQSKTINGI
LLLIERERNGEAIDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQRLMQEREV
PEYLHHVSKRLEEEADRVITYLDQSTQKPLIATVEKQLLGEHLTATLQKGLTQLLDENRI
QDLSLLYQLFSRVRGGVQVLLQHWIEYIKAFGSTIVINPEKDKTMVQELLDFKDKVDHIM
DVCFIRNEKFVNAMKEAFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEELEKMLDKI
MIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFK
DMELSKDIMVQFKQCQNIPGNIELTVNILTMGYWPTYVPMEVHLPPEMVRLQEIFKTFYL
GKHSGRKLQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEEIKLATGI
EDGELRRTLQSLACGKARVLTKTPKSKDVEDGDKFSCNNDFKHKLFRIKINQIQMKETVE
EQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLMSEVYNQLKFPVKPADLKKRIESL
IDRDYMERDKENSNQYNYVA
NT seq 2583 nt   +upstreamnt  +downstreamnt
atgtttccaacaggtttatcttcccctaatcccccaccacagccaacccaggaggctaga
ccggcggctactgatgtcaaaaacggtagtggaaacatcacatctccgaagaagaggaaa
ataaacggttcagaaaggggagacaccagtgataccatctcctcctcgccccccaaaccc
ctaaacccctcgtcgtccggctcccccaccgcgctgcacattcagaagaagttgcggttc
gaggactcggtggatttcatcgggctggatgtgaaaatggccgaggaggctgccgccgcc
aacgccgcgtcttcctgctccaataacaaaagcaaagccatgttcctggccggcggcgtg
ggccaccacgccaacggcttgacgaagaccgcggggtccggcaccttctccagcagcaaa
cccggagctgccaagaaactagtcatcaaaaactttagagaaaaacctaagttaccagag
aactacacacaggaaacctggcagaaattgaaagaggcagtggaggccatacagaacagc
acttctatcaagtacaatctagaggagctttaccaggctgtggaaaacctctgcttccat
aaggtatctgccaagctttacaaacagctgagggccgcgtgtgaagatcacatcaaggct
caaatcgatcagttcagagaggatgccctggacagtgttcttttcctgaagaaaatcgac
aagtgctggcaagatcactgcagacaaatgatcatgattaggagtatatttttgtttctg
gatcgcacatacgttttacagaattcaatgctgccatcaatctgggacatggggttggag
ctgttccgcttctacatcatcagtgatttgaaggtccagagtaaaaccatcaacgggatc
ctgctgctcattgagagggagcgaaatggagaggccatagaccgcagcctgctgaggagc
ctgctgagcatgctctctgacctgcagatttatcaagattcctttgagcagcgctttttg
gaggaaacgaaccgcctgtacgctgcagagggacagaggctgatgcaggagagagaggtt
ccagagtatctccaccatgttagcaaacgcctggaggaagaggctgacagagtaatcaca
tatctagaccagagcacacaaaaacctctcattgctacagtagagaagcagctgcttggt
gaacatctcacagcaactcttcaaaaagggctaactcaacttctggacgagaacagaatt
caggatctgtctcttctctaccagcttttcagtcgagtacgaggtggtgttcaggtgctc
ctgcagcactggatagagtacataaaggcttttggcagcacaatcgttatcaacccagaa
aaagacaaaacaatggtgcaagagctgctcgacttcaaagataaggtggatcacatcatg
gacgtgtgcttcataaggaatgaaaagtttgttaacgccatgaaggaggcttttgaaacg
ttcattaacaagcggccaaataaacctgcagagctcatagcaaaacatgtggattcaaaa
ctgagagcaggaaacaaagaagcaacagatgaagaactggagaagatgctggataagatc
atgattatctttagattcatctatggaaaagatgtgtttgaggctttctacaaaaaagac
ctggctaaaaggttgttggttggaaaaagtgcctcggtggatgctgaaaagtcgatgttg
tcaaagctaaagcacgaatgtggagccgcgttcaccagcaagttggagggaatgttcaag
gatatggagctttctaaagacatcatggtgcagttcaaacagtgccaaaacattcctggg
aacattgagctgacggtaaatatcctcaccatgggctactggccaacatatgtgccgatg
gaagtgcacctgcctccagagatggtgcgactgcaagagatttttaagactttttacctg
ggcaaacacagtgggcggaaactgcagtggcagtcaacgttaggccactgtgttttaaaa
gctgaattcaaagaggggaagaaggagctacaggtgtcactttttcaaactctggtgctg
ctgatgtttaacgaaggggaagagttcagcctggaagagatcaaactggccacaggaata
gaggatggtgaactacgccgaacgcttcagtcactggcttgtggaaaagctcgtgtcctc
accaaaaccccaaaaagcaaagatgtggaagatggagacaagttttcctgcaataacgac
ttcaaacacaaactcttcaggatcaagataaatcagattcagatgaaagaaacggtggag
gaacaagccagcaccacagaaagggtctttcaggatcgacagtatcagattgatgccgcc
atcgtacggatcatgaagatgaggaagactctgagccacaatctgttgatgtctgaagtc
tataaccagctcaagttccctgtcaagcctgctgatctgaagaagaggatagagtctctt
attgacagagactacatggagcgtgacaaggaaaactccaaccagtacaactatgtggcc
tag

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