Oryzias latipes (Japanese medaka): 101161571
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Entry
101161571 CDS
T02443
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101161571 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ola03041
]
101161571 (ddx46)
Enzymes [BR:
ola01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101161571 (ddx46)
Spliceosome [BR:
ola03041
]
Complex A
U2 snRNP components
U2 related factors
101161571 (ddx46)
Complex B
101161571 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
101161571
NCBI-ProteinID:
XP_011481429
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All DBs
Position
14:complement(3740797..3753485)
Genome browser
AA seq
1065 aa
AA seq
DB search
MARESRYAHYRKRSASRGRSGSRSKSRSPEKRSSKKDDRDRSRRDRSRSRDRRRSRSRDR
KRARRSRSRDRRRSRSRDRKRSSSRSRARRSRSGSAGKSKKTNDEKPKSKEKDSVDPLSE
KKKVKEEKEDEKTEDQQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKKELEEM
KQGKKWSLEDDEDDDEENSAVMEVEDDDSADGKEEGKEKEIEEEKKEDGDQEKETPMEQQ
AEEDEVDPLDAYMEEVKQEVKKFNMSDMKGNDKKGAMMVTKVVTVVKTKKGAGTHKKKGE
LMENDQDAMEYSSEEEEVDLQTALTGFQTKQRKILEPVDHAKIQYEPYRKNFYVEVPELA
KMTTEEVNAYRLELEGIMVKGKGCPKPIKTWVQCGVSMKILSALKKQGYDKPTPIQAQAI
PAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEESEGPISVIMTPTRELALQITK
ECKKFSKALGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRA
TYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQV
GGRSVVCSDVEQHVLVIEEDQKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKAS
YPCLSLHGGIDQYDRDSIINDFKNGVCRLMVATSVAARGLDVKQLILVVNYNCPNHYEDY
VHRAGRTGRAGNKGYAYTFITEDQVRYAGDIIKGLELSGAPVPPELEQLWASFKDQQKAE
GKTIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIEEQIESMFNS
KKRVKDLSAPGAAGGGGGVVSSSAASPGGFGMTPTSAGNNQKLEMAKKLALKINAQKNLG
AEAQDVMQQATNAILRGGPIVSPSVSAKTIAEQLAEKINAKLNYTPVEKLEEERQSAEQA
ETVRRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKI
YLAIESANELAVQKAKTEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtgagtcaaggtatgcgcattataggaaacgctcggcgtctcgtggacggtca
ggttcccgatcgaagagtcggtcccccgaaaaacggtcctccaaaaaagatgaccgagac
cgaagcaggagggacaggtcacggagccgcgaccgtcggaggtcccgatccagagaccga
aaacgagccaggcgctcccgaagcagagacaggaggaggtccaggagccgcgacagaaag
aggtcgtccagcaggagtcgagcccgcaggtcccggtccggcagcgcaggaaagagcaaa
aaaacgaacgatgaaaagcctaaaagcaaagagaaagacagtgttgatcccctatcagag
aagaaaaaagtgaaagaggagaaagaggatgagaagacggaggatcagcaagactttgac
cagaacaaactggaggaggagatgaggaaaaggaaggagcgagtggagaagtggagggag
gagcagaggaagaaagcaattgaaaacattggagagatcaagaaggagctggaggaaatg
aagcagggtaaaaagtggagcttggaggacgatgaagatgatgatgaggaaaactcggcg
gtaatggaggtagaggacgacgacagtgcagacgggaaagaagaaggaaaagaaaaggag
atagaggaggaaaagaaggaggatggagaccaggagaaggagactcccatggagcagcag
gcggaggaggacgaagtggatcctttggatgcttacatggaggaggtgaagcaggaggtg
aagaagttcaacatgagtgacatgaagggaaatgacaaaaaaggggcgatgatggtaact
aaagttgtgacagtcgtcaaaaccaaaaaaggagccggcactcacaagaagaagggcgag
ctgatggagaatgaccaggatgccatggagtactcatcagaggaagaggaggtggacttg
cagactgccctgacagggtttcagaccaaacagaggaagatcctggaacctgtcgaccac
gcaaagatccagtatgagccctaccgcaaaaacttctatgtggaggttcctgagctggca
aagatgacaacagaggaagtgaatgcatacaggttagaactggaaggcattatggtgaaa
ggaaaaggctgtcctaaacccatcaagacctgggtgcagtgcggggtgtccatgaaaatc
ctttccgctctgaagaagcagggctacgataaacccacccccatccaggctcaggccatc
cccgccatcatgtcgggtcgagacctcattggcatcgcgaagacgggcagcggcaaaacc
atcgcgttcctgctcccaatgttccgacacatcatggaccagaggcccctggaggagtct
gagggacccatctctgtgatcatgacgccgaccagagagctggctctgcagatcacaaag
gaatgcaagaagttctccaaagcactgggactcagggtggtgtgtgtttacgggggcaca
ggcatcagtgagcagattgctgagctgaagagaggagctgagatcatcgtgtgcacccca
ggaagaatgattgacatgttgggggccaacagcggtcgggttaccaacctgcgcagagcg
acctatgtggtgttggacgaagctgacaggatgttcgacatggggtttgagccccaggtg
atgcgtattgtggacaatgtacgtccagaccggcagaccgtcatgttctcagcgaccttc
cccagagccatggaggcgctggcccgcaggatcctctccaagcccatcgaggtgcaggtg
ggcggccgcagcgtcgtctgctcagacgtggagcaacatgtgctcgtgattgaagaggat
cagaaattcctgaagctgctggagattttgggccactaccaggagaaaggatctgtcatc
atctttgtggacaagcaggagcacgccgacggtttgctgaaagacctgatgaaggcctcc
tatccctgcctgtctttacatggaggaatcgatcagtacgacagagacagcatcatcaac
gacttcaagaacggagtttgtcgcttgatggtggccacgtctgtggccgccagaggcctg
gatgtcaagcagctgatcctggtggtcaactacaactgtcccaaccactacgaggactac
gtccacagggcgggacgcacgggcagagccggcaacaaaggatacgcctacacattcatc
acagaggaccaggttcgctatgccggggatatcatcaagggcttggagctgtcaggtgct
cctgtccctccggagctggaacagctttgggcctccttcaaagaccagcagaaagcggag
ggtaagaccattaagagcagcagtggcttctcaggaaaaggtttcaagtttgatgaaacc
gaacacgccttagctaatgagaggaagaagctgcagaaagcagcactcggactgcaggac
tctgatgatgaggacggagctctggatatcgaggagcaaattgaaagcatgtttaactct
aagaagagggtaaaggatctgtctgcacccggagcagctggtggtggtgggggggtggtt
tcttcgtcagcagcctctcccggcgggttcggtatgacgcctacgtcagctggaaacaac
cagaagctggagatggccaaaaagctggctctcaagatcaacgcccagaagaatctggga
gcagaagctcaggatgtgatgcagcaggccacgaacgccattttgcgtggaggacccatt
gtcagtccatccgtgtcggccaagaccattgcagagcagctggcagagaagatcaacgct
aagctgaactacacacctgtggagaagctggaggaggagaggcagtcagccgagcaggcc
gagaccgtcaggagatacgaagaagagctggagatcaatgacttcccacagacggccagg
tggaaggtgacttccaaagaggccctgcagaggatcggtgaatactctgaggcagccatc
accatcaggggaacctatttccctccaggaaaagaacccaaagagggagaacgcaaaatt
tatctggccattgagagtgcaaatgaacttgccgtacaaaaagctaaaaccgagattacg
cggctcatcaaagaagagctcatcagattacaaaattcctaccagccaacaagcaaaggc
cggtacaaagtgttgtag
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