Oryzias latipes (Japanese medaka): 101161713
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Entry
101161713 CDS
T02443
Name
(RefSeq) probable global transcription activator SNF2L2
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101161713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ola03021
]
101161713
03036 Chromosome and associated proteins [BR:
ola03036
]
101161713
Transcription machinery [BR:
ola03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
101161713
Chromosome and associated proteins [BR:
ola03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
101161713
Chromatin remodeling factors
BAF complex
101161713
PBAF complex
101161713
GBAF(ncBAF) complex
101161713
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
101161713
NCBI-ProteinID:
XP_023813897
LinkDB
All DBs
Position
9:complement(1009805..1068081)
Genome browser
AA seq
1581 aa
AA seq
DB search
MSTPSDTPGGMSHPGPSPAAGLSPGPILGPSPGPDRSPSSVHSMMGPSPGPGTPNAPHGM
QGQGQSDYSQDGMYPMHKPMEAMTDKSMTEAMHFGHMKGVGMRSLHSGMGPPQSPMDQHS
QGYMSPHPSPMGVHEHASSPMPGGGGGGGPTPPHIPPSQSGPMMPMEGGMAGMGQQGRGP
SAFSPVQLQQLRAQILAYKILARGQPLPENLQLAVQGKRSLPTMQQQPPQQPPQQQQQQA
SSVSPYRPSGMPMAQMGGPQASPCPAPAMQGANQSAAKPWSDGGENQAHVQKHLTPVSSG
RPSPAPPQTSAVPPGPALSGSAAGLPPGQQVSPMLQMQQKQNRITPIQKPQGLDPMGILQ
EREFRLQARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQRQLRQDVVACMRRDT
TLETALNSKAYRRSKRQTLREARMTEKLEKQQKLEQEKKRRQKHQEYLNSILQHAKDFKE
YHRSVSGKIQKITRSVATWHTNTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDK
RLAYLLQQTDEYVANLTALVYEHKAAQAAKEKKRKKKRKKKVDGDGEGTSAFGLDGEPID
ESSQMSELPVKVIQTETGKVLQGTDAPKSSQLEAWLEMNPGYEVAPRSDSEESGSEFEEE
EEDEMTKGEMEEKKIIDPNGDEVTVKAAKHIIESAKQDVDDEYSVPTDQTSLQSYYGVAH
AVIEKVDKQSTLLINGMLKHYQIQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYL
MEHKRLNGPYLIIVPLSTLSNWVYELDKWAPSVVKIAYKGTPALRRGLVPQLRSGKFNVL
LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQN
KLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFL
LRRLKKEVESQLPEKVEYVIKCDMSAIQKVLYRHMQKGILLTDGSEKDKKGKGGAKTLMN
TIMQLKKICNHPYMFQHIEESFAEHLGYPNGIISGPDLYRASGKFELLDRILPKLHATGH
RVLLFCQMTTLMTIMEDYFGYRNFLYLRLDGTTKSEDRAALLKKFNEEGSQYFIFLLSTR
AGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCSVNSVEEKILAA
AKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQNEEEDEVPDDETLNQMIARNE
DEFELFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTYEEEEEKMFGRG
SRCRRDVDYSDALTEKQWLRAIEDGNLEEMEEEIRLKKRKRKRRQDKDSSSREEGGGKAR
KRRGRPPAEKLSPNPPKLTKQMNTIIDTVINYRDGAGRQLSEVFVQLPSRKELPEYYELI
RKPVDFKKIKERVRNHKYRSVGDLEKDVMLLCQNAQTFNLEGSQIYEDSIVLQSVFKSAR
QKIAKDDDTEEDSDEDDDDDYESEAEAKAVRVKIKLSREGRGDKGKKRQSRGKAKPVVSD
DDSDEEPDDNDQSDKTQSDDD
NT seq
4746 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccccgtcggacactccaggtggcatgtcccatcctggcccttcccctgcggcg
gggctttccccggggcccatccttggccccagtccaggcccagaccgctcaccaagttct
gttcacagcatgatggggcccagtccggggcccggaacgcccaacgcccctcatgggatg
cagggtcaaggacaaagtgactactctcaggacggcatgtatcctatgcacaagcccatg
gaggccatgactgacaagtcaatgacagaagccatgcattttgggcacatgaagggtgtg
gggatgagatcgctccacagcgggatgggtcctcctcagagccccatggaccagcacagc
caaggttacatgtctccacatccttcccccatgggagtccacgagcacgcctccagcccc
atgccaggaggtggaggtggaggtggacccacgccgccgcacatccctccctcccagtca
ggtcccatgatgcccatggaaggaggcatggccggcatgggccagcagggccgcggaccc
tctgccttcagcccggtccagctgcagcagctcagagctcagattctggcctacaagatt
ctggcccgcggacagccgctgcccgaaaacctccagctggccgttcaaggcaaaaggagc
ctacccacaatgcaacagcagccaccgcagcagccaccgcagcagcagcagcagcaggcg
tcgagtgtgagcccctacagaccttcagggatgccaatggcgcagatgggcggcccccag
gccagcccctgcccggcgcctgccatgcagggagccaatcagagtgcagccaagccgtgg
agtgatggtggagaaaatcaggcccacgtgcagaaacacctcacccccgtctccagcggg
cgtccctctcccgcgccgccgcagacctccgctgtgcctccggggccggcactgagcggc
tcggcagctggactcccaccgggccagcaggtgtctcccatgctgcagatgcagcagaag
cagaaccgcatcactcccatacagaagccccagggcttggacccgatggggatcctgcag
gagagggagttcaggctgcaggctcgcatcgcccaccgaatccaggagctggagagtcta
ccggggtctctgcctcctgacctgaggaccaaagccactgtggagctcaaagcgctccgt
ctgctcaactttcagcggcagctgaggcaggacgtggtggcgtgcatgaggcgggacacc
accctggagacggcgctcaactcgaaagcttaccgacgcagcaagcggcagactctgagg
gaggcccgcatgacggagaagctggagaagcagcagaagctggagcaggagaagaagcgc
aggcagaaacaccaggaatacctcaacagcattctgcagcatgccaaggacttcaaagag
tatcaccgctcggtttccggcaaaatccagaaaatcaccagatccgttgccacgtggcac
actaacacggagcgggagcagaagaaggagacggagaggatcgagaaggagaggatgagg
aggctgatggctgaggatgaggaggggtacagaaaactgattgatcagaagaaagacaag
cgtctggcctacctgctgcagcagacggatgaatatgtggccaacctcactgctctggtt
tacgagcataaggctgctcaggctgccaaggagaagaagaggaagaagaagagaaagaag
aaggtggacggagacggtgaaggcaccagcgcctttggactggatggagagcccattgat
gagagcagccaaatgagcgagcttcctgtcaaagtgattcagaccgagaccgggaaggtc
ctacagggaaccgacgcccccaagtccagccagctggaggcttggctggagatgaaccct
gggtatgaagttgctccgcggtcagacagcgaggagagcggctccgagtttgaagaggag
gaagaagacgagatgacaaaaggagaaatggaggagaagaaaataatcgatcccaacgga
gacgaagtgacagtgaaggctgccaagcacatcatcgagtcggccaaacaagacgtggac
gatgaatacagcgttcctacggaccagaccagcctgcagtcctactacggcgtggcgcac
gccgtcatagagaaggtggataagcagtccacgctgctgatcaacggcatgctcaaacat
tatcagatccagggtctggaatggatggtttctctctacaataacaacttgaacgggatc
ctggctgatgagatgggcctcggtaaaaccatccaaaccatcgcgctcatcacctacctg
atggagcacaaaaggctcaacggcccgtacctcatcatcgttccgctttcgactttgtca
aactgggtctatgaactcgacaaatgggctccttctgtcgtcaaaattgcttacaaggga
actcccgctctgcgccgggggctcgttcctcagcttcgcagcgggaagtttaacgtcctg
ctgaccacctatgaatacatcattaaggacaagcacatcctggccaagatccgttggaag
tacatgatcgtggatgaaggtcaccgcatgaagaaccatcactgtaagctgactcaggtg
ctgaacacccactacgtggccccccgccgcctcctcctcaccggcacgccgctgcagaac
aagctgcccgagctgtgggctctgctcaacttcctgctgcccaccatcttcaagagctgc
agcaccttcgagcagtggttcaacgctccgttcgccatgacgggagagagggtggacctg
aacgaggaggagaccattctgatcattcgccgtctgcataaggtgctccgccccttcctg
cttcgtaggctgaagaaggaggtggagtcgcagcttccagagaaggtggagtatgtcatc
aaatgcgacatgtcggccatccagaaggttctgtaccgccacatgcagaagggcatcctc
ctcaccgacggctccgagaaagacaagaagggtaagggaggcgccaagaccctgatgaac
accatcatgcagctgaagaagatctgcaaccatccatacatgttccagcacattgaggag
tctttcgcggagcatctgggatatccaaacggcatcatcagtgggcccgacctgtaccga
gcttcagggaagtttgagctcctggatcggatcctcccaaagctgcatgccacaggccac
cgagtgctgctcttctgccagatgaccaccctcatgaccatcatggaggactacttcgga
taccgcaacttcctgtatttacgcctcgacggaacaaccaagtcagaggaccgagccgcg
ctgctgaagaagttcaacgaggaaggatctcagtacttcatcttcctcctcagcaccaga
gccggcggcctcggcctcaacctgcaggccgccgacaccgtggtcatctttgacagcgac
tggaacccgcaccaggacctccaggctcaggaccgcgcccaccgcatcgggcagcagaac
gaggtgcgcgtcctccgcctctgctccgtcaacagcgtggaggagaagatcctggcggct
gccaaatacaaactgaacgtggaccagaaagtcatccaagccggcatgtttgaccagaag
tcctccagccacgagcgccgcgccttcctgcaggccatcctggagcacgaggagcagaac
gaggaggaagatgaggtccctgatgatgaaacccttaaccagatgattgctcgcaatgaa
gatgagtttgagctcttcatgcgcatggacatggaccgaaggagggaggacgccaggaac
cccaaacggaagccccgcctcatggaggaagacgagctgccgtcctggatcatcaaagac
gacgccgaggtggaaaggctcacctacgaggaggaagaggagaagatgttcggaagaggg
tcccgctgccgccgggacgtggactacagcgacgcgctgaccgagaagcagtggctgagg
gccatcgaggacggaaacctggaggagatggaggaggagatccggctgaaaaagcgcaaa
cgcaaaagacgccaggacaaggactcgtccagcagggaggagggaggcggcaaggccagg
aagagacgtgggcggccgccggcagagaagctctcccccaacccccccaagctcaccaag
caaatgaacaccatcatcgacaccgtgatcaactacagagacggcgccggacggcagctc
agtgaagtcttcgttcagcttccgtccagaaaggagctcccggaatattacgagctgatc
agaaaacccgtggacttcaagaagatcaaggaacgtgtgaggaaccataaatacaggagc
gtgggcgacctggagaaggatgtgatgctgctctgtcaaaacgctcagaccttcaacttg
gagggatcacagatctacgaggactccatcgtcctgcagtcggtgttcaagagcgccaga
cagaagatcgccaaagatgacgacacggaggaagacagcgacgaagacgatgatgatgac
tatgagtcggaggctgaggccaaggccgttcgcgtgaagatcaagctgagcagggagggc
cgcggcgacaaaggaaagaagaggcagagccgggggaaggccaagccggtggtgagcgat
gacgacagcgacgaggagccggacgataacgatcagtcggacaaaacccaaagtgacgac
gactga
DBGET
integrated database retrieval system
