Oryzias latipes (Japanese medaka): 101161866
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Entry
101161866 CDS
T02443
Name
(RefSeq) protocadherin-18 isoform X1
KO
K16499
protocadherin delta 2
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ola04515
]
101161866
Cell adhesion molecules [BR:
ola04515
]
Cadherins
Protocadherins
101161866
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
PAG
TMEM154
Cadherin_C_2
BBS1
Motif
Other DBs
NCBI-GeneID:
101161866
NCBI-ProteinID:
XP_011471446
UniProt:
H2N1N9
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Position
10:2241096..2253721
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AA seq
1239 aa
AA seq
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MGAKRIRAKARTGPLSTVALRLLFVLALVEGTAGKTLKYKVYEEQKVGTVIARLKEDVAG
VLSKLPSSLTFLFRAMQRGGPRFLSVREEDGEISIATKIDREKLCEKNLNCSIEFDVVTL
PTEYLQLFHVEVEVLDINDNSPHFSRGIVPIEISESASVGTRVPLDGAVDADVGENALHT
YSLTPNNFFKIDVRTRTDGAKYAELVVMRELDREVQSSYQLQLTASDNGAPPKSGSTLLK
ISISDSNDNSPAFDEQVYIINLLENSPLGTLIIDLNATDPDEGTNGKIVYSFSSHVSPKI
LETFKINPENGHITLIQKVDYESTVSYELDVQAQDLGPNSIPGLCKIVVKVVDVNDNKPE
ININLMTTGKEEVAYISEGAPVDTFIALVRVDDSDSGLNGEVVCRLHSQGHFRLQKTHEK
NYMILTNVSLDREKRSEYSLTVIAEDKGLPSLSTIKHFTVQVLDENDNPPRFEKSRYEVF
KSENNSPGAYLMTVVASDPDLGTNGQVTYSIIDALVQNIPISTCVTIDPSNGAIYALRSF
DHEDVSRIAFTVRARDGGNPELSANTSVLLTILDENDNPPVIHSPSLRNHTAELPVWKYA
SPGQLITALKIIDHDSGTNGEFSCAIVGGNEDGLFVMDARRCELRTNASLQQAPRDVMEV
RVEVQDRGASRLTTGALLRLTIQENIDPLPSLYPTGSSQAPLDPSLIVIISLVAVCTLLL
IVMVMFATARCNREKKNPRHKYNCRVAESSYQNHPKKPSRQIHKADITLVPTINGTLPVR
AHSRSPLPSPTPERGTLGSRQSHHSRQSLNSLVTISSNHVPENFALELAHATPPVEQVSQ
LLSMLHQGQYQPRPSFRGNKYTRSYRYALNEMDKFSLKDSGRGDSEAGDSDYDPGRESPM
DRLICEGFTEIYTPDGRHRPHAAMRLCTEECRVLGHSDQCWMPPLASPASSSSDYRSNLY
IPGEEARQAADITQEKVPQPCTDTGPARNQSFSTFGKDLGEEGGGEDERGEGNSTETKDE
DLCGTSSLLSEMSSVFQRLLPQGLDSYMQVNENQKGTSLSGVGVPMTGSLDRRRGHLPGK
PSPSVHQQGVAAWAANTHFQNPGSSIGPSGQHQGGSYHTLKPSTKLSSQSGSHKGSQAPK
NSPQSNGHHSKPHSTPLLTALVSPTLAQPSPAPLPAQLPGPSSKWLPAMEEIPENYEEDD
FDSVLCHLQGKRSDSRHELVDASELVAEINKLLQDVRQS
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atgggggcaaagaggattcgagccaaagccaggactggtccgctctccaccgtggctctc
cggctgttgtttgtgctcgcgctcgtggaaggcaccgcggggaaaacgctcaaatacaaa
gtttacgaggagcagaaagtgggcacggtcattgcgcggctgaaggaggacgtggccgga
gttctttccaagctccccagctccctcacgtttctgttccgtgcaatgcagagggggggc
ccacggtttttgtctgtccgggaggaggacggagagatcagcattgccaccaaaatcgac
cgcgagaagctttgtgaaaaaaacttaaactgctccatcgagttcgacgtggtcacgctc
cccacggagtacctgcaactgttccacgttgaggtggaggtcctggacatcaacgacaac
tccccgcacttctcacgcggcatagtgcccatcgagatttccgagagcgcgtccgtgggg
acgcgcgtcccgctggacggagcggtggacgcagacgtcggggagaatgccctgcacacc
tactcactgacgcccaacaacttctttaagattgacgtgaggacgaggacggacggggcc
aagtacgcagagctggtggtgatgagggagctggaccgggaggtgcagtccagctaccag
ctgcagctcacagcctctgataatggtgcaccccccaagtcagggtcaactctgctcaaa
ataagtatctcagattccaatgacaacagtccagcatttgatgagcaggtatatatcatc
aacctgctggaaaactcaccccttgggactctaatcattgacttaaacgccacagatcca
gatgagggcaccaatgggaaaatagtctactctttcagcagccatgtctcaccaaagatc
ctggagacatttaaaatcaatccagaaaatggccacatcactctaattcagaaagtggac
tatgaaagcaccgtatcatatgaactggacgttcaggctcaagatttgggccctaattca
attcctggactttgcaaaattgtggtgaaagtggtggatgtgaatgacaacaagcccgag
ataaacatcaacctgatgacaacggggaaggaggaggtggcctatatttcagagggagcc
ccagtggatacattcatcgctttggttcgggttgatgacagtgattcaggactgaatggt
gaagtggtgtgcaggctgcatagtcaaggccacttcaggcttcagaagactcatgagaag
aactacatgatcttgaccaatgtgtcgctggacagggagaagaggtcagaatatagtttg
acggtgatagctgaggacaagggccttcccagtctttccacaatcaaacatttcacagtc
caggttctggatgaaaacgataaccctcctcgttttgaaaagagccgttatgaggtcttt
aaatctgaaaataactctccaggagcctacttgatgactgtggtggcctcagatccagat
ctgggtaccaatggccaagtcacctactccattatagatgctctggtccaaaacatccca
atttccacctgcgtcaccattgacccctccaatggtgccatctatgccctgcgtagcttt
gaccatgaagacgtcagcaggattgccttcacggttcgggctcgtgatggggggaacccc
gagctgtcggccaacaccagcgtccttctcactattctggatgaaaatgacaacccgccg
gtcatccattccccttcactgcggaaccacacagccgagcttcctgtgtggaagtatgct
tctccaggtcagttaatcacagcgctcaaaatcattgaccatgactctggtaccaacgga
gaattcagctgcgccattgttggtggaaatgaggatgggctctttgtgatggacgcgagg
aggtgcgaactcagaactaatgccagcctccaacaggctccacgggatgtgatggaggtc
cgagtggaggtgcaagatcggggagcaagtcgcctaaccacaggagccttgctcaggctg
accatacaggagaacattgaccccctcccttccctttatcccaccggctccagtcaggcc
cctctagatccctccctcattgtcatcatttctctggttgctgtctgtactctgctcctc
atcgtcatggtgatgtttgcaactgcccgctgcaaccgtgagaagaaaaaccccagacac
aaatacaactgccgagtggcagagagtagttaccagaaccatcccaagaagccttccagg
cagatccacaaggccgacatcacactggtacccaccatcaatggaaccttaccggtccga
gcgcactctcgctctcctctgccctcacctacacctgagaggggcactctggggagcaga
cagagccatcacagccgccagtctctcaacagcctggtcaccatttcttccaatcacgtg
ccggagaactttgctctagagttggctcacgctacacctcctgttgagcaagtctcacag
cttctgtccatgctccatcagggccagtaccagccccggccaagcttcagaggcaacaaa
tataccaggagctacagatatgccctcaacgagatggacaagtttagcctgaaggacagc
gggcgcggggacagcgaagcgggggacagcgactatgatcctgggagggagtcccccatg
gaccggctcatctgtgagggctttactgagatatatacccctgatggccggcacagaccg
catgcagccatgcgtctctgcacagaggagtgtcgggttctggggcactcggatcagtgc
tggatgccccccctcgcctcgccagcctcatcctcctctgactatcgaagcaacctctac
attcctggggaagaagcccgccaagccgccgacatcacccaggagaaggtacctcagcca
tgcactgacaccggaccggctcggaaccagagcttctccaccttcggcaaggacttgggt
gaggagggtgggggagaagatgaaaggggggaggggaactccactgaaaccaaagatgaa
gatctgtgtggaacctcatcattgctgtcagagatgagcagcgtgttccagaggttactc
ccccagggtttggactcatacatgcaggtcaacgagaaccagaagggaactagtctaagt
ggggtgggggtccccatgacaggatctttagatcgtaggaggggtcaccttcctggaaag
cccagcccctccgttcatcagcagggcgtggcggcctgggctgccaacacccacttccag
aaccccggaagcagcatcggcccgtccggtcagcatcaggggggcagctaccacaccctg
aagcccagcaccaaactcagctcccagagcggtagccacaagggctcacaggcccccaaa
aacagcccccagagcaacgggcaccactccaaaccccacagcacccccctgctcacagcg
cttgtcagcccaacactggcgcagccttccccggcccccctcccagcccagcttcctggg
ccctcttcaaagtggttgccggccatggaggagatcccggagaactacgaggaagacgac
tttgactctgtgctctgccaccttcagggcaagcgtagcgacagccggcacgagctggtg
gatgccagtgagctggtggctgagatcaacaagctcctgcaggatgtgcggcagagttaa
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