Oryzias latipes (Japanese medaka): 101161965
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Entry
101161965 CDS
T02443
Symbol
trmt13
Name
(RefSeq) tRNA:m(4)X modification enzyme TRM13 homolog isoform X1
KO
K15446
tRNA:m4X modification enzyme [EC:
2.1.1.225
]
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ola03016
]
101161965 (trmt13)
Enzymes [BR:
ola01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.225 tRNA:m4X modification enzyme
101161965 (trmt13)
Transfer RNA biogenesis [BR:
ola03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
101161965 (trmt13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRM13
zf-TRM13_CCCH
zf-U11-48K
Methyltransf_32
Methyltransf_28
Motif
Other DBs
NCBI-GeneID:
101161965
NCBI-ProteinID:
XP_004067704
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All DBs
Position
4:5883510..5894234
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AA seq
483 aa
AA seq
DB search
MNRFKYCYGAKNWARERGVGGALIMSVMASPLPNRCNFFLERKKRFCKMMVGKGQRFCGE
HANAAEGGSSRRIICPLDPKHTVAEDKLEKHLKKCNSRQKPKPIYYVENINAGPDDGDEG
LPQVSLSERSWSELELLLEKLKKASEGLQCEVEDNFLSHPALQEELVNPKNGDPAHKHLK
QQASILGHLDELGLLRRGRCFVEFGAGRGKLSHWIHEALKNNGDLKGSEDLQLLLVERSS
IRFKVDGKHQDAGVQFERLQVDIEHLDLSKVPLLQDKKFPLVGVGKHLCGAATDLALRCL
LETSRLRDPETEPPQKRLKPSEPAAEATPGDSGACSGASVSPVLGLAVALCCHHRCEWRH
FVGRQFFLERGLGAAEFSAFCRMSSWATCGVRAANQDYSSHHSTNQERAEEEHEPLDETD
TMNKFLSAVEREKIGRLCKRLIDSGRCHFLKSQGFSSRLTCYTDQGVTLENVLLTAVPSS
SSS
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgaaccggttcaaatattgctatggagctaaaaactgggcacgtgaacgcggcgtcggc
ggcgcgctcatcatgtccgtcatggcgtccccgcttcccaacagatgtaacttcttcctg
gagaggaagaaacgtttctgtaagatgatggtggggaagggacagcgcttctgcggggaa
catgcgaacgcggcggagggaggaagcagcaggaggatcatctgtcctctggatcccaaa
cacactgtggccgaagacaaattggagaaacacctgaagaaatgcaactccagacagaaa
cccaaacctatttattatgtggagaacatcaatgcaggtccagatgatggcgatgaagga
cttccacaggtgagtctgtcagaacgcagctggtcagaattggagcttcttctggagaag
cttaagaaggcctcagaaggactgcagtgtgaggtggaggacaacttcctgtctcatccc
gccctccaggaagaacttgttaacccaaagaatggggaccctgcccacaaacacctgaag
cagcaggcctccattttaggtcacctggacgagctgggtctccttcgaagggggcggtgc
tttgtggagttcggtgcgggtcgggggaaactttctcattggatccacgaagccctgaag
aacaacggggatctgaagggcagcgaggatctacagctgctgctggtggagcgcagcagc
atccgattcaaggtggatgggaaacaccaggatgctggagttcagtttgaaaggctccaa
gtggacatagagcacctggacctgagtaaagttcccctgttgcaggacaagaagtttcct
ttggttggagttggcaagcatttgtgtggtgcagctaccgacttggctctgagatgtttg
ttggaaacatccagattaagagacccagagactgagccgccccaaaaacgcctcaagcca
tctgaaccagcagcagaagcgaccccaggtgattctggtgcttgttctggcgccagcgtc
agtcctgtgcttggcctggcggtggcgttgtgctgccaccatcgctgcgagtggcgtcac
tttgtgggaaggcagttcttcttggaaagaggacttggagccgcagagttctccgccttt
tgccgcatgtccagctgggccacatgtggagttcgagctgccaatcaggactattcgtca
catcattcgaccaatcaggaaagagcagaagaggaacacgaacccttggatgaaacggac
accatgaacaagttcttgtctgcggtggagcgagagaagatcggccgtctctgcaaacgt
ctgatcgacagcggcagatgtcacttcctaaaaagccaaggcttcagcagcagattgacc
tgttacacagaccaaggcgttacgctggagaacgttttacttactgctgtcccatcttcc
tcctccagctga
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