Oryzias latipes (Japanese medaka): 101162114
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Entry
101162114 CDS
T02443
Symbol
sox2
Name
(RefSeq) transcription factor SOX-2
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ola03000
]
101162114 (sox2)
Transcription factors [BR:
ola03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
101162114 (sox2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
101162114
NCBI-ProteinID:
NP_001265810
UniProt:
C3VV07
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All DBs
Position
4:complement(18601531..18602499)
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AA seq
322 aa
AA seq
DB search
MYNMMETELKPPAPQTNTGGTGNTNTSGTGTNQKNSPERVKRPMNAFMVWSRGQRRKMAQ
ENPKMHNSEISKRLGAEWKLLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMK
KDKYTLPGGLLAPGGNGMGTGVGVGVGAGLGGGVNQRMDSYAAHMNGWTNGGYGMMQDQL
SYQHAGLNAHNPSQMQPMHRYDMSALQYNSMTSSQSYMNGSPTYSMSYSQQTTPGMTALG
SMGPSSVVKSESSSSSPPVVTSSSHRAAPGCQSGDLRDMISMYLPGAEVSEQTAQTRLHM
SGHYQSTVPGTTINGTLPLTHM
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgtataacatgatggagactgaactgaagccccctgctccccagaccaacacggggggc
acggggaacacaaacacgtccggcaccggcaccaaccagaaaaacagcccggagagagtc
aaaagacccatgaacgccttcatggtgtggtcccgaggccagaggaggaagatggcgcaa
gaaaaccccaaaatgcacaactcggagataagcaagaggctgggcgcagagtggaaactt
ctgtcagagagcgagaagagacctttcatcgacgaggctaagaggctgagggccctgcac
atgaaggagcacccggattacaaataccggccccggcggaaaaccaagaccctcatgaag
aaggacaaatacaccttaccgggcgggttgctggctcctggaggaaacggtatggggacc
ggggtcggtgtcggggtaggggccggcctgggcggtggggttaaccagcggatggacagt
tacgcggcgcacatgaacggctggaccaacgggggctatggcatgatgcaggaccagctg
agctaccagcacgcaggtctgaacgcgcacaacccgagccagatgcagcccatgcaccgc
tacgacatgagcgccctgcagtacaactccatgaccagctcccagagctacatgaacggc
tccccgacgtactccatgtcctactcccagcaaaccacgccgggtatgaccgccctgggc
tccatggggccctcctcggtggtgaagtccgagtccagcagctccagcccgcccgtcgtc
acctcctcgtctcaccgggccgccccgggctgccaaagcggtgatctgagggacatgatc
agcatgtacctgcccggggcggaggtcagcgagcagactgcccagaccaggctacacatg
tccggccactaccagagcaccgtgcccgggacgacgatcaacggcacgctgccgttaaca
cacatgtaa
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