Oryzias latipes (Japanese medaka): 101162163
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Entry
101162163 CDS
T02443
Name
(RefSeq) collagen alpha-1(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04510
Focal adhesion
ola04512
ECM-receptor interaction
ola04518
Integrin signaling
ola04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101162163
04518 Integrin signaling
101162163
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101162163
09142 Cell motility
04820 Cytoskeleton in muscle cells
101162163
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ola00536
]
101162163
Glycosaminoglycan binding proteins [BR:
ola00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101162163
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Amnionless
Motif
Other DBs
NCBI-GeneID:
101162163
NCBI-ProteinID:
XP_004080643
LinkDB
All DBs
Position
19:complement(15525168..15544425)
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AA seq
1446 aa
AA seq
DB search
MFSFVDIRLALLLSATALLVRGQGEDDNRSAGCEMNGEFYNENDVFKPEPCKMCTCQNGQ
PLCDEVYCEDILDCEDPYIPEGECCPVCNDGQEDYKMPEGPEGPRGDPGPAGPPGRDGIP
GQPGLPGPPGLPGAPGTTGIGGNFSPQMSFDPSKSSGPPVPGPMGPLGPRGPPGPPGASG
PQGFNGPPGEPGEPGASGPMGPRGPGGPPGKNGDDGEPGKPGRPGERGSAGPQGARGFPG
TPGLPGIKGHRGFSGLDGAKGDAGPAGPKGEPGAPGENGIPGAMGARGLPGERGRPGAPG
PAGARGNDGNTGAAGPPGPTGPAGPPGFPGGPGAKGETGPQGGRGAEGPQGARGEPGNPG
PAGAAGPAGNPGSDGNPGAKGSPGMAGITGAPGMPGMRGPPGGQGAVGAQGQKGNNGDPG
PPGPKGEAGAKGEPGPAGLQGLPGPSGEEGKRGPRGEPGGAGARGAPGERGAPGARGFPG
ADGAGGPKGAPGERGAPGPMGPQGATGESGSPGAPGAPGSKGVTGSPGSPGPDGKAGPAG
APGQDGRTGPAGPPGARGQPGVMGFPGPKGSSGENGKPGERGPAGPVGAVGAPGKDGDVG
APGPAGPAGAAGEKGEQGPAGPNGFQGLPGPQGATGETGKPGEQGVPGEAGPPGPSGARG
ERGFPGERGGNGPAGPAGPRGAPGSAGNDGPKGEPGAAGAPGGVGSPGMQGMPGERGAAG
LPGVKGERGDPGGKGADGAAGKDGVRGMTGLIGMPGPPGPQGEKGEPGPVGVAGLTGPRG
SPGERGENGPPGPAGFAGPPGADGQPGLKGESGDTGPKGDAGAPGPAGPVGAAGPQGPAG
PPGPKGARGGAGAPGPTGYPGPAGRVGPPGPAGAAGPPGPVGPVGKDGARGQRGETGPAG
RPGEAGAAGPPGPPGEKGSPGSDGAAGTPGAPGPQGIAGQRGIVGLPGQRGERGFPGMPG
PAGEPGKQGASGPVGERGAPGPAGPPGLSGAPGEAGREGSAGNDGAPGRDGAPGPKGDRG
ESGTPGPPGPPGAPGAPGAVGPSGKAGDRGETGPAGPSGPAGPAGVRGPAGPAGAKGDRG
ETGEAGERGHKGHRGFTGMQGLPGPAGPSGERGPAGSSGPAGPRGPAGNNGSPGKDGVNG
MPGPIGPPGPRGRNGDMGPAGPPGPPGLPGPPGPPGSGFDFVSQPIQEKAPDPLRGGYRA
DDPNMVRDRDMEVDTTLKTLSQRVEKIRSPDGSQKSPARMCRDLRMCHPEWKSGMYWVDP
NQGSPLDAIKVHCNMETGETCVSPSQSSIPMKNWYRTKNIREKKHVWFSESMTGGFQFQY
GGSEADPEDVNIQIAFMRLMSNQASQNITYHCKNSIAYMDSATGNLKKALLLQGSSDTEI
RAEGNSRFTYSVSEDGCTSHTGTWGKTVIDYKTPKTSRLPIIDIAPMDVGGPDQEFGVEV
GPVCFL
NT seq
4341 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattcggttagcgcttttgctcagcgcaacagcgctgttggtg
agaggtcaaggcgaggatgataacagatctgcaggatgtgagatgaacggagagttttac
aacgagaacgatgtatttaaaccagaaccctgcaagatgtgtacatgccaaaatggacaa
cctctgtgcgatgaagtctactgtgaggacatcctggactgcgaggatccgtacatccca
gagggagagtgctgcccagtctgcaatgacggtcaggaagactacaagatgccagaaggc
cccgaaggccccagaggagaccccggtccagctggtcctcctggcagagatggaatcccc
ggacaacctggcctccccggcccacctggcctccctggcgcacctggaaccaccggcatt
ggcggaaacttctctcctcaaatgagcttcgacccctcaaagtcaagcggcccaccagtt
cctggcccaatgggtcccctgggcccccgtggtcctcctggaccccctggagcttcaggt
cctcagggtttcaatggacctcctggagagcctggagaacctggagcttctggtcccatg
ggtccccgtggtcctggtggaccccctggaaagaacggagatgatggcgagcccggcaaa
cctggacgccctggtgagcgtggaagtgctggcccccagggtgcccgtggatttcctgga
actccaggactccccggcatcaagggacacagaggtttcagtggtctggatggagccaaa
ggagacgctggtccagctggtcccaagggagagcctggtgcccctggtgagaatggcatc
cccggtgctatgggtgctcgtggtctcccaggagagaggggtcgtcctggagctcctggc
cctgctggtgctcgtggtaatgatggtaacactggtgctgctggtcctcctggccctacc
ggacctgctggcccccctggattcccaggtggtcctggtgctaagggagaaacaggtcct
cagggaggtcgtggagctgaaggaccacagggtgcacgtggtgagcctggtaacccaggc
cctgctggagctgctggtcctgctggtaatcccggttctgatggtaaccccggtgctaag
ggctctcctggtatggccggtattactggtgctcctggtatgcctggtatgcgtggtccc
cctggaggtcagggagctgttggtgctcagggtcagaaaggtaacaatggtgatcctggt
cctcctggtcctaagggagaggctggagccaagggtgaacctggcccagctggacttcag
ggacttcctggcccatcaggtgaagaaggaaagagaggacctcgtggagagcctggtggt
gctggagcccgtggagcccctggagagcgtggtgctcctggtgctcgaggtttccctggt
gctgatggagctggtggtccaaagggtgcccctggtgagcgtggtgcccctggaccaatg
ggaccccaaggagccactggtgaatctggatcccctggtgcacctggtgctcctggatcc
aagggtgtgactggtagccctggaagtcctgggcctgatggcaaagctggacctgctggc
gctcccggacaagacggtcgcacaggacctgctggccctcctggggccagaggacagcct
ggtgtcatgggattccccggacccaaaggaagttctggtgaaaatggtaagcctggtgaa
agaggccccgctggacctgttggtgccgttggtgctcctggcaaagatggtgatgttggt
gctcctggacctgctggacctgctggtgctgctggagagaagggagagcagggacctgct
ggtcctaatggtttccagggtcttcctggacctcaaggtgcaacaggtgaaactggcaag
cctggtgagcagggtgttcctggtgaagctggacctcctggcccatctggagccagaggt
gaaaggggattccctggagagcgtggtggcaatgggcctgctggtccagctggacctcgt
ggtgctcctggttctgctggtaacgatggacctaagggtgagcctggtgctgctggtgcc
cccggtggtgtgggatcccccggtatgcagggaatgcctggagagcgaggagctgctggt
ctccctggagttaagggagaaagaggtgaccccggtggtaaaggagctgatggtgcagct
ggcaaagatggtgtccgtggcatgactggtcttattggaatgcctggacctcccggtcct
cagggagagaagggagagcctggtcccgttggagttgctggactgactggtcctcgtggt
tcccccggtgagcgtggagagaatggacctcctggacccgctggctttgctggacctcct
ggtgctgatggtcaacctggtctcaagggagagtctggagacactggacctaagggagat
gctggtgctcctggacccgctggacctgtcggagccgctggtcctcagggacccgctgga
cctcctggacccaaaggtgctcgtggtggtgctggtgctcctggccctactggttaccct
ggacctgctggcagagttggacctcccggtcctgctggagctgctgggcctcctggacct
gttggacccgttggcaaagatggagcaagagggcaacgtggtgaaactggacctgctgga
cgcccaggagaagctggtgctgctggacctccaggaccccctggagagaagggatctccc
ggttctgatggagctgctggtacccctggtgcccctggacctcaaggtatcgctggtcag
cgtggtattgttggtctccctggacagcgtggagagcgtggtttccctggtatgcctgga
ccagctggtgagcctggaaagcagggagcttccggacctgttggtgagcgtggagcccct
ggaccagctggccctcctgggctttctggtgcccctggagaggctggtcgtgagggatct
gctggtaacgatggtgctcctggtcgtgatggagctcctggacccaagggagaccgtggt
gagagtggaactcctgggcctcctggaccccctggtgcgcccggagccccaggtgctgtt
ggcccctccggcaaggccggtgaccgtggagagactggtcctgctggtccttctggtcct
gccggccctgctggtgttcgtggacctgctggccctgctggagctaagggagacagagga
gagactggtgaggctggagaaagaggccacaagggacacagaggattcactggcatgcag
ggtctgcccggacctgctggaccttctggagaaagaggacctgctggttcctctggacct
gctggacctcgtggacccgctggaaacaacggttccccaggtaaggatggtgtgaacggt
atgcccggacccattggaccccctggacctcgtggtcgcaatggagatatgggacccgct
ggtcctcccggacctcctggactccctggacctcctggacctcccggaagtggattcgac
tttgtcagtcaacctattcaggagaaagcccccgatcccctgcgcggaggctaccgtgcc
gatgatcccaatatggttcgcgatcgtgacatggaggttgacaccaccctcaaaaccttg
agccagagagtagagaagatccgcagcccagacggtagccagaagagcccagcacgcatg
tgccgcgacctgaggatgtgccaccctgagtggaagagcggcatgtactgggttgacccc
aaccagggctctcctctggatgccatcaaagtccactgcaacatggaaactggagagacc
tgcgtctctcccagccagtctagcatccccatgaagaactggtacagaaccaagaacatc
agagagaagaaacacgtctggttcagcgagtccatgactggtggattccagttccagtat
ggcggcagtgaagctgatcctgaggatgtcaacatccagattgccttcatgcgtctgatg
tccaaccaggcctctcagaacatcacataccactgcaagaacagcatcgcctacatggat
tctgccaccggcaacttgaaaaaggccctgcttctccagggctccagcgataccgagatc
agagctgagggcaacagccgcttcacatacagtgtcagcgaggatggctgcacgtcacac
actggcacatggggcaagacagtcatcgactacaagacaccaaaaacatcccgcttgccc
atcattgacattgctcctatggatgttggtggacctgatcaggaatttggcgttgaagtt
ggccctgtttgcttcttgtaa
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