Oryzias latipes (Japanese medaka): 101162276
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Entry
101162276 CDS
T02443
Name
(RefSeq) ATP-binding cassette sub-family A member 1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola02010
ABC transporters
ola04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
101162276
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
101162276
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ola02000
]
101162276
Transporters [BR:
ola02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
101162276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
AAA_23
Motif
Other DBs
NCBI-GeneID:
101162276
NCBI-ProteinID:
XP_020558036
LinkDB
All DBs
Position
4:13436309..13463066
Genome browser
AA seq
2366 aa
AA seq
DB search
MGFFHQLYLLLWKNVTYRRRNKIQLIIELAWPLFLFLILIAVRQSHPPYKQGQCHFPNKA
LPSAGTLPWIQSIVCNVNNPCFRSPTPGETPGVAGNFNNSLLSRVFMDAQALLLGRGNQS
YTAFQDLMESVRLLGTRFESSPTVPLKDCLVANETVSTFLLTNGSLSSETVDRLMNAHLN
IQVARTAAQMPLKDVVCNGSLLEKMLSVEGGATNMTDLQTQLCNLPAEVLKEAESLFFSQ
LDLTKFITRELVVSNAEDLRVMSQAISTISQDLTVLTDSISSLSSFTEVSQALSFLTPES
NTAEGERFSAFSKIMCGHPEMGGERIPSFNWYEDNDFKSLLGKDAIEDANLGLSNTTTPF
CRSLIHQLESDPRSRIVWRGIKPLFVGKLLYAPDTPAVKEVMKEVNKTFEDLQVLQDVDE
AWMEVGPEIKTYMETSSDIRLLRDLLRRPEVAVLVNMRLENTPWTASQIAHFLSTPSPNA
ERKPGHPVTWLDLYNDFSHVTNTVAQVTKCISLDKLEGLESEAKLIDRALELLDNRQFWG
GVLFLLPNSSTTELPPHVSYKIRMDIDNVARTNKIKDNFWDPGPAAEPFSDLRYIWGGFV
YIQDLVERALNQVLTGIKQTTGIYIQQMPYPCYVDDVFLRVLNRSLPLFMTLAWIYSVAM
ITKSIVYEKEARLKETMRIMGLSSGTLWFSWFISSLIPFLISAALLIGLLKWGNILPYSD
PAVVFFFLMAFATATIMQCFLISTFFCKANLASACGGLIYFSLYLPYALFTAWRDHLNST
HRILASFLSPVAFGFGCEYFAQYEEQGLGIQWFNLQSSPVEGDSYSFTTSIIMLYVDAFI
YALAAWYIEAVFPGEFGIPRPWYFIFQLNYWGGVPLEAGMPIPPAPTDQDEDNIEAEPSN
MTLGVNIRNLVKIYKKGGKLAVNHLNLKFFEGQITSFLGHNGAGKTTTISVLTGLFPPTS
GTVYIKGLDIRYDMDIIRNTLGVCPQHNVLFDILTVEEHVWFYGCLKGLSEEKVKAELDN
LLEDVGLLHKRHEQTKNLSGGMQRKLSVAIAFVGGSKVVVLDEPTAGVDPYSRRGIWDLL
LKYRKGRTIILSTHYMDEAELLGDRIAIISKGKLCCCGSPLFLKSQLGSGYYLTVVKREE
TNPNTPSGSSFSTSTSIITNKLPHAKDSESSLSEDTGLGSDESSSCVAALLALVQQHIPS
ASLVEESRREAVINLPQKAAKDGSLAIFLSKLDQRLPELGISSYGLSDSTLEEIFLRVAE
ETGVDAEPEQEELSPNSQQPSGERVEEQPAEQPEPGKKRRRKKEPLETDLLSGDCRGGEP
LSGSWLMWQQLKALFIKRWLYARRSRRGFFAQIVLPALFVLVALLFSLIVPPFGRYPSVE
LQPWMYGEQYTFFSNDAPGNPAMENLLEALLDQPGFGTKCMEKEEGNNTSCEVEGGGQFR
RPQVSFSMWQMFSKGNWSKERPSPECQCSTEDVSRMLPECPEGAGGLPPPQIKRVTGDIL
QNLTSYNVSDYLVKTYAQILKKSLKTKKLVNEFRYGGFSLGGKVTQTEVDVEHVEDAVSA
FRRRYQVTQNSSLDSLLNKLPAFLEGLHSKDNVKVWFNNKGWHSMVSFVNVMNNGLLRAS
LPPGPERSKHGISAYNHPLNLTKDQLTEVALMATSVDVLISTCVIFAMSFVPASFVLFLI
EERASKAKHLQFVSGVQPLLYWVANFIWDMLNYAVPAAMVVLIFIGFQQKSYVSEQNLPA
LILLLLFYGWSITPLMYPASFVFTVPSTAYVVLTSINLFIGINCSMATFVLELFVDDNLN
QINNVLKKVFLIFPHFCLGRGLIDMAKNQAMADAFHRLGARPVLDPFQWDFVGKNLFCMA
ASGVFYFIFTILLQYKFFIHLKPWWTEPQLPPIGPEDEDVARERARVMSGKFHSDILTMI
NLSKVYKAGKKPAVNRLCLGIPPGECFGLLGVNGAGKTSTFRMLTGDTPITHGEAFLDRH
SVLTEMDRVHQLMGYCPQFDAISDLLTGREHLELYARLRGVPEESVSKVAQWGVRKLGLT
QYAEQKAGGYSGGNKRKLSTAISLIGAPPVIFLDEPTTGMDPKAKRFLWNCIHSVTKEGK
AVVLTSHSMEECEALCTRMAIMVNGQFQCLGSVQHLKNRFGDGYTVILRLADTKSDTESC
PVDEYMTKSFPNIELKEQHQNVLQYHLPSHGCSLALIFDALANNCEELGVADFSVSQTTL
DQVFISFAKDQTDDCLTDVIISNGLAQSNFPARLTSPAVLPQPPVTPTQQRKSPLLPEKS
PEINSTTAKARRTSSSKSHKEKGGSISMSRLTQAQKMGSSGSNSSSGSNIQGESSKSHGS
KRKAENSSKDPSALFIVSNSSQDSSL
NT seq
7101 nt
NT seq
+upstream
nt +downstream
nt
atggggtttttccatcaactgtatctcctgctgtggaaaaacgtcacttaccgcagaaga
aacaagattcaactgatcattgagttagcctggccactcttcctttttctcatcctcatc
gctgttcgtcaatcacaccccccttacaaacaaggccaatgtcatttcccaaacaaagct
ctgccgtcagcaggcacgctgccctggatccaaagcatcgtctgcaacgtcaacaacccc
tgcttccgcagcccgacgccgggggagacgccaggcgtagctgggaacttcaacaactcc
ctattgtcgcgtgtgttcatggacgctcaggctctcctgttgggccgtggaaaccagagt
tacactgcctttcaggacctgatggagagcgttcggctgcttggaacgagatttgagtca
tcgccaactgtcccacttaaagactgcctggtagccaatgagacagtttccacctttctg
ctcactaatggcagcctgtcatctgaaactgtggatcggctgatgaacgctcatcttaat
attcaggttgctcggactgcagcccagatgcctcttaaggatgtagtgtgcaatggtagt
ttgctagaaaaaatgctgtctgtagaaggtggagcgaccaacatgactgatcttcaaact
cagctgtgcaacctcccagcagaggtcctgaaggaggctgaaagcctcttcttcagccag
cttgacttgaccaaatttataacgagagaacttgtcgtgtccaacgctgaagatcttcga
gtcatgagtcaggcaatcagcaccatttcccaggacctgaccgtactaacagacagtatc
tcctccctatccagttttacagaagtcagtcaagccctcagttttctcactcctgaaagc
aacacagcagaaggagaacgtttcagtgctttttcaaagatcatgtgtggtcacccagag
atgggcggtgaacgtatcccatcgtttaactggtatgaagacaacgactttaagtcttta
ttgggcaaagacgcaatagaggatgcaaatctgggcctttctaacaccaccactcctttc
tgcaggagtttgattcaccagttggagtccgaccctcgttctcgaatcgtgtggcgagga
atcaaaccgctgtttgtggggaaactgctgtatgcaccagacactcctgcagtgaaagaa
gtcatgaaagaggtaaacaaaacttttgaggatctgcaagttctgcaggatgtggatgaa
gcctggatggaggtgggaccggaaatcaagacctacatggaaacaagttcagacattcgt
cttctgcgggatttgttgaggcgtccagaggtcgcggtactggtgaacatgcgtctggaa
aacacgccttggacggcctctcagatcgctcatttcttgtctacaccttcaccaaacgct
gaaagaaaaccaggtcatccagtgacctggttggacctctacaatgacttcagccatgtg
accaacactgtggcacaagtcactaagtgcatctccctggataaattggaggggttggag
tctgaggcaaagctgatcgacagagctctggagctgctggacaacaggcagttttgggga
ggtgtccttttcctgttgccaaattcctccacaactgagttgccgccacatgtctcctac
aagatccgaatggacattgataatgtggctcgaaccaataagatcaaggacaacttttgg
gatcctggccctgccgctgaaccatttagtgacctgcgctacatttgggggggatttgtt
tacatccaagatctggtggaaagagctctgaaccaggtgttaactggaataaaacaaacg
acgggtatctacatccagcagatgccctacccctgttatgtggacgatgtttttctgcgg
gtgctgaaccgctctctgccgctcttcatgaccctggcctggatctactcagtggcaatg
atcaccaaatctattgtgtatgagaaggaagccaggctgaaggaaaccatgaggattatg
ggtctgagttcaggaacactgtggttcagctggttcatcagcagtctgattcctttccta
atttcagcagcactcctcattggtctgctcaagtggggtaacatattgccatatagcgat
ccagctgtcgtcttctttttcctcatggcgtttgccactgcaaccatcatgcagtgcttt
ctgatcagcacgttcttctgcaaggccaacctggcttctgcctgtggaggactcatctac
ttcagcctctacctgccttacgcactcttcaccgcctggagggaccacctcaactccaca
caccgaatcttagcaagtttcctgtcccctgtggcctttggctttggctgtgaatatttt
gcacaatatgaagagcagggtcttggcatccagtggtttaacctgcagagcagccctgtg
gaaggagactcgtacagcttcaccacctccatcatcatgctctatgtggatgccttcatc
tatgccctcgcagcctggtacatcgaagccgtttttcctggtgagtttgggatccccagg
ccgtggtatttcatctttcagctcaactactgggggggtgttcctcttgaagcaggcatg
ccgatcccaccagctcccacagaccaggatgaagataacattgaggcagaacccagtaac
atgactctgggtgtgaacatcagaaatctggtcaaaatctacaaaaagggagggaaactt
gctgtcaaccatctgaacctgaagttcttcgaaggccagatcacatcttttcttggtcac
aacggagctgggaaaaccaccaccatctctgtcctgactggcctcttcccgcccacctct
gggactgtgtacatcaagggcctggacatccgctacgacatggacatcatcaggaacacg
ctgggagtttgccctcagcacaatgtcctgtttgacatactcacagtggaggaacatgtg
tggttttacggatgtctgaagggtttgtctgaggaaaaggtgaaggctgagcttgacaac
ttgctggaagatgtcggcctgttgcacaagcggcacgagcagactaaaaacctctctggt
ggcatgcagaggaagttgtctgtggcaatagcgtttgttggaggctccaaagtggtggtt
ttggacgagcccacagctggtgtcgacccgtactcccgtagagggatctgggatctgctc
ctgaaataccgcaaaggccgaaccatcatcttgtccactcactacatggacgaggcagag
ctgctgggggaccggatcgccatcatttccaaggggaagctatgctgctgcggatcacca
ctcttcctcaagtcccagctgggttctggctactacctgactgtggtgaagagggaggaa
acaaaccccaacactcccagtggctcgagtttctccaccagcaccagcataattaccaac
aaactgcctcacgccaaggactctgaatcctctctgagtgaagacactggactgggaagt
gatgagagcagctcatgtgtagcagccctgcttgctctggtgcagcagcacatccctagt
gcgagtttagtagaggagtccagacgagaggcggtgattaacctgccgcagaaagctgcc
aaggacggcagcctggcgatcttcttatctaaactggaccagcggcttcctgagttgggc
atcagcagctatggcctgtcggacagcacactggaggagatctttctgcgagtggctgaa
gaaactggcgtggacgcagagccggagcaggaggaattatcgccaaacagccagcagccg
tcgggggagagggtagaggagcagccagctgagcaacctgagccaggaaagaaaagacgc
cgtaaaaaagagcctttagagacagatctgctgagtggagattgcagaggaggagagcct
ctgtcaggctcgtggctgatgtggcagcagctgaaggctctcttcatcaaacgctggctc
tacgctcgaaggagccgcagaggattcttcgctcagattgttcttcctgctctgtttgtc
ctggtcgccttgctcttcagcctcattgttcctccttttgggaggtacccttccgttgag
ttacaaccctggatgtacggcgagcagtacaccttctttagcaacgatgctcctggaaac
ccagccatggagaacctgcttgaggctttgctggaccagccaggttttggaactaagtgt
atggaaaaggaagaagggaacaacacgagctgcgaagtcgaggggggtggtcagttcagg
agaccccaggtgtcattttccatgtggcagatgttcagcaaaggaaactggagcaaagaa
agaccctcgcctgaatgtcagtgcagcacggaggatgtctctcggatgctgcccgagtgt
cccgaaggtgcaggggggcttccacctccacagataaagagagtaactggagacatcctc
caaaatctaaccagttataatgtctctgattacctggtaaagacatacgcacaaattctg
aagaaaagcctcaaaaccaagaaattagtgaatgaattcaggtatggaggcttctctctt
gggggtaaagttacacaaactgaagtggatgttgaacatgtcgaagacgctgtgtcggct
tttaggagacgttaccaagtaacacagaacagctcgcttgacagcctgctaaacaaactg
ccggcatttctggagggactgcacagtaaagacaatgtcaaggtgtggttcaacaataaa
gggtggcactctatggtgtctttcgtcaacgtcatgaacaatggccttctgagagccagc
cttccaccaggcccagagaggagcaaacatggcatcagcgcctataatcacccactcaac
ctcaccaaggatcagctcactgaagtggccctcatggctacatccgtggacgtgttaatc
tccacctgtgttatcttcgccatgtcctttgtgccggccagttttgttctttttctgatc
gaggagcgagccagtaaagccaaacatctgcagtttgtcagtggcgtccagccactgctc
tactgggtggccaacttcatctgggacatgttaaactatgccgtcccggctgccatggtg
gtgctgatcttcatcggtttccagcagaagtcgtacgtctctgagcaaaacttgcccgct
ctcatcctgctgctcctcttctatgggtggtctataactcctctgatgtacccagcatcc
tttgtgttcaccgttccgagcacagcttacgtggttctcacctccatcaacctcttcatc
ggcatcaactgcagcatggccacctttgttctggagctgtttgtagatgacaatctgaat
caaatcaacaatgtcttgaagaaagtgtttttaattttccctcacttctgcttgggacga
gggcttattgacatggctaaaaaccaggctatggcagacgccttccacagactgggcgct
agaccagttcttgatccttttcaatgggactttgttgggaagaacctcttttgtatggca
gcctcaggagtgttttacttcatcttcacaatcctcctgcaatacaagttcttcattcac
ctcaaaccgtggtggaccgagcctcagctgcctcctattggtccagaggatgaggatgtg
gcgagggagcgagcgagggtcatgagtggcaaatttcactcagacatcctcaccatgatc
aacctgagcaaggtttataaagcaggtaaaaagccggctgtgaatcgtctttgcctgggg
attccccctggtgagtgtttcggcctgctgggggtaaacggtgcaggaaaaacatctacg
tttcgcatgctgaccggagacacgcccatcacacacggagaggctttcctggaccgtcac
agtgtgttaacagagatggaccgagtccaccagctgatgggttactgtccgcagtttgat
gccattagtgacctgttgacgggtcgggaacatctggagctgtacgctcgcctgcgagga
gtaccagaagagtctgtttcaaaggtggcgcagtggggggtaagaaagctggggctgact
cagtatgcagagcagaaggctggaggctatagcggaggaaacaagaggaaactctccacc
gccatctccctcatcggtgctccgcctgttatattcttggatgagcccaccaccggcatg
gacccaaaagctaaaaggtttttgtggaactgcatccatagtgtcaccaaagaaggcaaa
gctgtagtgctcacgtcccacagtatggaggagtgtgaagctctctgcaccaggatggcc
attatggtcaacggccagtttcagtgtctggggtctgtgcagcacctaaagaacaggttt
ggggatggatacacagtcatcctgcgcttggcggacaccaaatctgacacagagtcgtgt
cctgtggatgaatatatgacaaagtcctttcccaacatcgagctgaaggagcagcaccag
aatgtcctgcagtaccacctgccatcgcacggctgctccttggctttgatctttgacgcg
ctggccaacaactgcgaggagctgggcgtggcagacttctctgtctcacagaccacattg
gaccaggtgttcatcagcttcgcaaaagatcagaccgacgactgtctcacagacgtgatc
atcagcaacggcctggcacagtcgaacttccccgctcgacttacctccccggctgtcctg
ccacaaccaccagtcactcccacacagcagaggaaatccccactgctgcctgaaaagtca
cctgagatcaattccactactgctaaagcaaggaggacgagcagcagcaagtctcacaaa
gaaaagggcggtagcatcagcatgagcagattaacacaggcgcagaagatgggcagcagc
gggtccaacagcagcagcggcagcaacattcaaggagagtccagtaaatctcacgggtcc
aaaagaaaggcagagaactcgagcaaagatccctctgcgctctttatcgtgagcaacagc
tcacaggacagctcattataa
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integrated database retrieval system
