Oryzias latipes (Japanese medaka): 101162326
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Entry
101162326 CDS
T02443
Symbol
smarcd3
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101162326 (smarcd3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ola03021
]
101162326 (smarcd3)
03036 Chromosome and associated proteins [BR:
ola03036
]
101162326 (smarcd3)
Transcription machinery [BR:
ola03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
101162326 (smarcd3)
Chromosome and associated proteins [BR:
ola03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
101162326 (smarcd3)
PBAF complex
101162326 (smarcd3)
GBAF(ncBAF) complex
101162326 (smarcd3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
TFIIA
Motif
Other DBs
NCBI-GeneID:
101162326
NCBI-ProteinID:
XP_023806084
LinkDB
All DBs
Position
20:21149741..21183394
Genome browser
AA seq
551 aa
AA seq
DB search
MATEETAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPPGPPYGGSPAVRPGL
PSPVMEPSRKRPAPSQQVQQQQQQQQQQQQAVQNRARKKPVGFPGASEMPARQMDMREPQ
SDPTLGSNAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKR
PMKQQKRKLRLYISNTFNPARPDADDSDGSIASWELRVEGKLLDDPGKQKKKFSSFFKSL
VIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDVSVRCTLLLMLDYQPPQFKLDPR
LARLLGIHTQTRSCIIQALWQYVKTNKLQDSHDKEYINCDKYFQQKSGMLHPLQRRDHPA
GYQPVIQTLEGHKLLAQRLDQIFDCPRLKFSEIPQRLTNLLLPPDPIVINHVISVDPNDQ
KKTACYDIDVEVEDPLKSQMSSFLLSTANQQEIASLDNKIHETIESINQLKIQRDFMLSF
SRDPKGYIQDWLKSQSRDLKLMTDVVGNPEEERRAAFYHEPWSQEAVSRYFYCKIQQRRQ
ELEQALAVRNT
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggctacggaggagacggcggggggagccaggaaagccaccaagagcaaactgtttgag
ttcctggtccatggggtgcgtcctggcatgccgtctggagcaagaatgccccaccagggt
gctcccatgggccccccaggtcccccgtacggagggagccctgccgtgcgacccggcctg
ccctccccggtgatggagcccagtcgcaagaggcccgccccctcccagcaggtccagcag
cagcagcagcaacagcagcagcagcagcaggccgtccagaaccgagccagaaagaagccg
gtgggattccccggagccagtgagatgccagcgaggcagatggacatgcgagagccccaa
tcagatcccacgctcggatccaatgctaagagaaggaaaatggcagacaagattcttccg
caaaggatccgtgagctggtcccggagtcccaggcctacatggatctgctggctttcgag
cgcaaactggatcagaccatcatgcgcaagcgcgtggacatccaggaggccctgaagaga
cccatgaagcagcaaaaacgaaaactgagactttacatctccaacaccttcaacccggcc
cggccggacgccgacgactcggacggcagcattgcatcgtgggagctgcgggttgaaggg
aagctgctggatgatccggggaaacagaagaagaagttctcctccttcttcaagagcctg
gtgattgagctggacaaagacctgtacggtcctgacaaccacctggtggagtggcaccgc
acgcccaccacccaggagacggacggcttccaggtgaagcggccgggcgacgtgagcgtg
cgctgcacgctgctgctgatgctggactaccagcccccccagtttaagctggaccctcgc
ctggctcgcctgctgggcattcacacgcagacccgctcctgcatcatccaggcgctctgg
cagtacgtgaagaccaacaagctgcaggactcccacgataaggagtacatcaactgtgac
aagtacttccagcagaaatctgggatgctgcatcctctacagagaagagaccacccagcc
ggttatcagcctgtgattcaaactcttgaaggacacaagctcctcgcacaaagattagat
cagattttcgactgccctcgactgaagttctccgagattccccagcgcctcaccaacctc
ctgctgccccccgaccccatcgtcatcaaccacgtcatcagcgtggatccaaacgaccag
aaaaaaacggcgtgctacgacatcgacgtggaggtggaagaccccctgaagagccagatg
agcagctttctgctctccaccgccaaccagcaggaaatcgcctcgctggacaataagatc
catgaaaccatcgagtccatcaaccagctgaagatccagagagacttcatgctcagcttc
tccagagatcccaagggctacatccaggactggttgaaatcccagagcagagacttaaag
ttaatgacagacgtggttggaaaccccgaggaggagaggagagcggctttttaccatgaa
ccctggtcccaggaggccgtcagtcgctatttctactgcaagatccagcagaggaggcag
gagctggagcaggctttggcggttcgcaacacctaa
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