Oryzias latipes (Japanese medaka): 101162444
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Entry
101162444 CDS
T02443
Symbol
myo5c
Name
(RefSeq) unconventional myosin-Vc isoform X1
KO
K10357
myosin V
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
101162444 (myo5c)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101162444 (myo5c)
04131 Membrane trafficking [BR:
ola04131
]
101162444 (myo5c)
03029 Mitochondrial biogenesis [BR:
ola03029
]
101162444 (myo5c)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ola04812
]
101162444 (myo5c)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
101162444 (myo5c)
mRNA cycle factors
P-body specific factors
101162444 (myo5c)
Membrane trafficking [BR:
ola04131
]
Others
Actin-binding proteins
Myosins
101162444 (myo5c)
Mitochondrial biogenesis [BR:
ola03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
101162444 (myo5c)
Cytoskeleton proteins [BR:
ola04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
101162444 (myo5c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
Myosin_N
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
101162444
NCBI-ProteinID:
XP_011474324
LinkDB
All DBs
Position
6:15360689..15372909
Genome browser
AA seq
1740 aa
AA seq
DB search
MTLLELYTRYNRVWIPDEKQVWKSAEIKQDFHSGDNVLELLLEDSTEYHYPVDPSRPELP
PLRNPDILVGENDLTALSYLHEPAVLHNLKVRFVESRIIYTYCGIILVAINPYKQLPIYG
DAIIHAYSDQNMGDMDPHIFAVAEEAYKQMARNHKNQSIIVSGESGAGKTVSARYAMRYF
AVVSKSSNKNRVEDKVLASNPITEAIGNAKTTRNDNSSRFGKYTEISFDKKYRIIGANMS
TYLLEKSRVVFQADDERNYHIFYQMCSCADLPEFKSLRLLSADKFLYTCMGGDIAIEGVD
DKSDMNETRRTFSLLGLKEDFQADVFKVLAAILHLGNVEIRDQGNDKSSIAPTDPHLAVF
CELLEVSAEGLLRWLCNRRIVLSAETVVKPVPKERAVAARDALAKQTYAHLFDCIVNRIN
TALQVPGKPHAFIGVLDIYGFETFDINSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKE
DIPWTLIDFYDNQPVIDLIEAKLGIMDLLDEECLFPQGTDQSWLQKLYNYLDANPLFEKP
RLSNKAFVIQHFADKVEYQCKGFLEKNRDTLYEELVDTMRASKLSFLANFFQEEELTPTA
NKSFKVKPARPPVKATNKQLRTSVGDKFRSSLFLLMETLNATTPHYVRCIKPNDEKLPFE
YDSRRVVQQLRACGVLETIRISAQSYPSRWTYIEFYSRYSILMSHLEADVRDKKETCKCV
LQRLIHDTNQYKFGRTKIFFRAGQVAYLEKLRLDRLREACVIIQKHFRAWSQRRKYLRIR
DAAIVLQQYIRGQKTIRKTVTAEALKQGWAAVVIQRHWRGYCMRQIYQAVCQATITIQAF
TRGWMARKQYKKMMEAHKAMILQKYTRAWLARRRFQTMRRLVLNVQLSYRVQQLRKKIEE
QTKENRGLMEKLTTLANSQSQNTHRLQGLEIQLEKVTSQKESLEAKERKTKEETSLTITQ
LQCRIDEVNLEKQNLEKKFEASIKEAKESFDHLNRSLREDMENEARLRKIAENNIEIKKQ
DYEKEMVTLKEEIRRLKEERVGLQRKIKEGEEVNSDLQEQIVQLTKHVKIIPELRRDLNN
MQNDRNNMDRRIKQQSELARAKMREIARNLLGEFVEEEVLLGITSDDSEKIYEPEDLLEA
FEGLQKATRLLENHQKEQKEKYETKVEGLELKVDHLQNENCKLQNLFQEKINVTESIHRE
VSRLTSENSLIPELKLQVSELQRQKQELEDRFMEQGKELEDKNTEINNILQIRISEESSQ
RRYFEERAKELEDAKMELEDKVEELEEENDHLKKQQLMENEAKRKLREETSILTAENMDF
EEQLDQKDRLIKKLQNQIKSLEASQKAKQNSPIPKEYLGMLEFKREDESRLVQNVILDLQ
PKGVVVNMIPCLPAYILFMCVRHADYLNDDAKLKSLMSAIICAVKKVILSRCKDFVLLSF
WLSNTHQLINLLKQYSGEEEFLKQSSPRQRKNCLQNFDLSEHRQIFSDLAIHIYHQFISV
LQKILTPAIVPGMLEHESLQGISSMKPTGFRKRSSSLYDEESKNFTISSIIKQLSVFHST
MIHHGMDQNLINQVTKQLFFLVAATTLNQIMLRKDMCSCRKGMQIRCNISYLEEWLKEKD
LQSSNAMETLTPLAQAAWLLQVNKSTDDDAKEITEKCTELNPVQIVKILNSYTPIDDFEK
RVTSSFVRKVQSLLIHEGSTQLMLDTDFHFQVTFPFQSSSQALELLQVPASLHLDFLTRV
NT seq
5223 nt
NT seq
+upstream
nt +downstream
nt
atgactttattggaactttacacgaggtataacagagtctggattccagatgaaaaacaa
gtttggaagtcagctgaaatcaaacaagactttcattctggcgataatgttcttgaatta
ctacttgaagattccactgagtaccactacccagttgatccatctagaccagaactccca
cctctcagaaatcctgacatcttggtgggggagaacgacctcacagctctcagctacctg
catgaacctgcggttctccacaatctaaaagtgcgatttgtcgaatcaagaatcatctat
acctactgtggcattattttggtggcgataaatccttacaagcagcttcctatctatgga
gatgctatcatacatgcatactctgaccagaacatgggcgacatggacccacatatattt
gcagtggcggaggaggcctataaacagatggctagaaaccataaaaaccaatccatcatt
gtcagtggagaatctggagccggcaagacggtgtcagctcggtacgctatgaggtacttt
gctgttgttagcaaatcaagcaataagaaccgagttgaagacaaagtgctggcatctaat
ccaataacagaggctataggaaatgccaaaacaacccggaatgacaacagcagccgcttt
gggaaatacacagagatcagttttgacaagaaataccggatcatcggcgcaaacatgagc
acatacctgttagagaaatccagagtggtttttcaggcagacgatgagcgcaattatcac
attttctaccagatgtgttcctgtgcagacttgccagaatttaagagccttcgactgttg
agcgcagataagttcctgtacacctgcatgggtggtgacatagccattgaaggcgttgat
gacaaaagtgacatgaatgaaactcgacggacattctctcttctggggttgaaagaagac
tttcaggcagatgtctttaaagttctggcagcaatcctgcatttaggaaatgtggagatc
agagaccaaggaaatgacaaatcatccattgctcccacggatccacacctggcagtgttc
tgcgagctgctggaggtgagcgcagaggggctgctgcgatggctgtgcaaccggaggatc
gtcctgtcggctgaaactgttgtgaagccggtacccaaggagcgagcagtagctgccagg
gatgctctagctaaacagacctatgcccatctctttgactgcattgtcaacaggatcaac
acagcactgcaggttcctggaaagccgcatgcttttattggtgttctggacatttatggg
tttgagacctttgacatcaacagctttgaacagttttgtatcaactatgcaaatgaaaag
ctgcagcaacagtttaacttgcatgtgtttaagctggagcaagaggagtacatgaaagag
gacatcccctggacactgattgatttctatgacaaccagcctgttattgacctaattgaa
gcaaagttggggattatggacttgcttgatgaagaatgtttgttcccccaaggcactgat
cagagctggctgcagaagctgtacaactatctggatgccaatcctctgtttgagaagcca
aggttatcaaacaaggcatttgtgattcaacactttgcagacaaggtggaatatcagtgc
aaaggttttcttgagaagaatcgagacactctttatgaagaactggtggatacgatgaga
gctagcaagctttcatttctggccaacttttttcaagaggaggagctaacccccacagcc
aataagagcttcaaagtaaagccagccaggcctccagtgaaagccaccaataaacagctg
agaacctctgtgggagataagtttcgcagctccctctttttattgatggagacactcaat
gccactacccctcactatgtgcgctgcattaagccaaatgatgaaaagctcccgtttgaa
tatgattccagaagagttgtgcagcagctgcgagcttgtggcgtccttgagacaattcgt
atcagtgcacagagctacccgtccagatggacgtacattgagttttacagtcgatacagc
atcctgatgtcgcacctggaagccgatgtcagggacaaaaaagaaacctgcaaatgtgtg
ctccagagactgattcacgacacgaaccagtacaagtttggccgcactaaaatcttcttc
cgagctggccaggtggcatatctggagaagctgcgtcttgaccgccttcgagaagcctgt
gtgatcattcaaaaacatttccgagcatggagccagagacggaagtacctgaggatcagg
gatgcagccattgtcctacagcagtacatcagaggacagaaaaccatccgtaaaacagtg
actgctgaggcactgaagcaaggctgggcagcagtggtcatccagagacactggagagga
tactgcatgaggcaaatctaccaggcagtctgtcaggccaccatcaccatccaggccttc
acacggggttggatggctcgaaaacagtacaagaagatgatggaggcgcacaaagcaatg
attttacagaagtacaccagagcatggctggctcgacggcgatttcaaaccatgcgtcgg
ctggtgcttaacgtccagctctcctacagggtgcagcagctcagaaagaagattgaagag
cagactaaagagaatcgaggattgatggaaaaattgaccaccttggccaactctcagtct
caaaacacacatagacttcaaggcctggaaatacagctggaaaaagtaaccagccaaaaa
gagtctttggaggcaaaagagaggaaaacaaaggaggaaactagtttgacaatcacgcaa
cttcagtgccggatagatgaggtcaacctggaaaagcagaacttggagaaaaaatttgaa
gcttccatcaaagaggccaaagaaagctttgaccatttgaacaggagtcttcgagaagac
atggagaatgaagcaaggctcagaaagattgctgaaaacaacattgaaatcaagaagcag
gactacgagaaggagatggtgactcttaaggaggagatcaggagactgaaagaagaaaga
gtcggcctgcagaggaagataaaggagggagaagaggtgaactctgatctgcaggaacag
atcgttcagctcaccaagcatgtgaagatcatacccgagctgcgcagagatctgaacaat
atgcagaacgacagaaataacatggatcggaggataaaacaacagtcagaattagcaaga
gctaaaatgagggagattgcaaggaatcttcttggtgaatttgttgaagaggaggttctc
ttggggataacttcagatgattctgagaagatctatgagcctgaagatttgctggaagcc
tttgagggtctgcagaaagccacaaggcttttggaaaaccaccaaaaggagcaaaaagag
aaatatgagacaaaagtagagggactagaactgaaagtggaccatctgcaaaacgagaac
tgcaagctgcaaaacctgtttcaggagaaaattaatgtcactgaaagtatccaccgagaa
gtgtctagactcaccagcgagaactctttgattccagagctgaagctgcaggtttcagag
ctccaaagacaaaagcaagagctggaggaccgtttcatggagcagggcaaggagctagaa
gacaaaaacacagaaatcaacaatattcttcagataaggatctcagaggagagctcacag
cgcaggtattttgaggagagagccaaagagttggaggatgcaaagatggagctggaagac
aaggtggaggagcttgaagaggagaatgatcacttaaagaagcagcagctcatggagaat
gaagctaagaggaaactcagagaggagacgtcgatattaactgccgagaacatggacttt
gaggagcagcttgaccagaaagacaggctgataaagaagctccaaaatcaaataaaaagc
cttgaagcatcacaaaaagctaagcaaaactctccaatccctaaggaatacctcggcatg
ttggagttcaaaagagaagatgaatccagacttgttcagaatgtcattctggacttgcag
cccaaaggtgtggtggtcaacatgattccctgcctgccagcttacatcctgttcatgtgc
gtccgccacgctgactacctgaacgacgacgccaaactcaagtctctcatgagtgcgatc
atttgtgctgtcaaaaaagtcattttgagtcgctgcaaagactttgtgctgctgtccttt
tggctctccaacacacaccagctgatcaaccttctaaagcaatacagcggagaggaagaa
ttcctgaaacaaagtagcccccggcagaggaagaactgcttacagaatttcgatttgtcc
gagcacagacagatattcagcgatctggccattcacatctatcatcagttcataagcgtc
ctgcagaagatcctcactcctgctattgtacctggaatgctggagcacgaaagtttacag
ggaatttctagcatgaaacctacaggcttcaggaagcgctccagcagtctttacgacgaa
gagtcaaagaacttcaccatttcctccatcatcaagcagctctctgtcttccactccacc
atgatccaccatggcatggaccagaatctgatcaatcaggtcacaaagcagctcttcttc
ctggttgctgccaccacccttaaccagataatgcttcgtaaagacatgtgctcctgcaga
aaaggaatgcaaatcagatgcaacatcagttatctagaggagtggctgaaggagaaggac
cttcaaagctccaatgctatggagactttgacgcccttggcccaggccgcctggctgcta
caagttaacaagtccactgatgacgatgccaaagaaatcacagaaaaatgcacggagctc
aacccagttcagattgtcaaaattttaaattcttacaccccaattgatgattttgagaag
cgagtgacgtcctcatttgtccggaaagttcagtctttacttattcatgaaggatccacc
caactgatgctggacacagactttcatttccaggtcacatttcctttccagtcatcttca
caggctttagagctcctacaagtcccagccagccttcatctagacttccttaccagggtc
tga
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integrated database retrieval system
