Oryzias latipes (Japanese medaka): 101162589
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Entry
101162589 CDS
T02443
Symbol
chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ola03036
]
101162589 (chd9)
Chromosome and associated proteins [BR:
ola03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
101162589 (chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
HTH_CHD1_Hrp3
DEAD
HDA2-3
Chromo_MIT1
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
101162589
NCBI-ProteinID:
XP_011491682
UniProt:
A0A3B3HY92
LinkDB
All DBs
Position
3:29612233..29686465
Genome browser
AA seq
3018 aa
AA seq
DB search
MDFFDDSNLFEGGLEGLGEDGFPPGPSLVDELNLSADFEPLQVETLGPVKHQDMMPGVSA
QQHLPNYSQQMGHYGGIKQQNPMAQAFSGSQSTGCDIMAEQLGQFHNTAIGQVPQSNGLF
CNSGSPMWGNQDQNGNMFHPLSQQQRQQLCHQQLHNQQLHVRQHPQQQNLSCRHQQEEQQ
HRMRQQQLQQQSHHQHLLNQHRQINTSVVSLQQQHHNFSFHQGGQSNNQQQVQHSEQPIQ
HQIPQREAQFYSRVHPNKSYLENASLSRTSLPIQQQDSYHALRRGQAFPGSGLEDSILSH
PTHSSSRVQSLSTCSVTSANAYQPAPYPAYPGESEIPNFGQLSSSTATVSGPTATSSLTS
TVPGLSGAACQFQSPALMRQLHTKTTVNQADECSFQVLGCSVESQKNFKSSEMFGETMKC
YPNVGRPLPSEQPQCCGAINTNGYQALGDGLLASEAQDSKLESLETTDLLPDLLPQLEDT
FKAEPWIEASQKGCDDSNPTSREYKAENPRKNINGPGSQVCVLSPPVKSNSSSSSSSSSS
SSSSSSSSSSSSEKRVPRRTPQQMESTLLDKQEKANRIISEAIAKARQRGEKNIPRVMSP
ESFPSSSAQFKTHRDRGHKGNGKARSKDKSSKRACIIQSKPKQKAKIGKIVIKIGKKKKR
KQESSEEESDEDPPLRHTSKDDDSKRRSNRQVKRKKYTEELETRLSDEEVKVIVKAKKSN
TAASKEPSVQLFVENPSEEDAAVVDKIMSSRVVKKEVSPGVMVEVEEFFVKYKNYSYLHC
EWATEQQLEKDKRIQQKIKRFKMKQAQRALFFADIEEDPFNPDYVEVDRVLEVSYCEDKD
TGQEVVYYLVKWCSLPYEDSTWELKDDVDQSKIEEFEQLQAVKPDSRRVERPPANLWKKR
EHSREYRNGNMLRDYQLEGVNWLLFNWYNRRNCILADEMGLGKTIQSITFLEEIYRIGIK
GPFLIIAPLSTIANWEREFHTWTHLNVIVYHGSVVSRQMLQQYEMYFRDAQGRAIRGAYR
FQAVITTFEMILGGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGFKLMNLEHKVLLTGTP
LQNTVEELFSLLHFLEPTRFPSENTFMQEFGDLKTEEQVQKLQGILKPMMLRRLKEDVEK
KLAPKEETIIEVELTNIQKKYYRAILEKNFSFLAKGAGQANMPNLVNTMMELRKCCNHPY
LIKGAEEKILEDFREVHNPSAPDYHLQAMVQSAGKLVLIDKLLPKMKAGGHKVLIFSQMV
RCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT
AADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDK
AVLQSMSGRDNSLGGGSGGGAVQQQLSKKEIEDLLRRGAYGAIMDEEDEGAKFCEEDIDQ
ILQRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWDKWAKKADIDMEMVNGRN
SLVIDTPRVRKQTRPFSATKDELAELSEGESDGDETKPKLRRNDRLNSYGRTECFRVEKN
LLVYGWGRWKDILNHGRFKKQLTEWDVESICRALLAYCLVHYRGDDKIKSFMWDLIAPTE
DGRTKELQNHLGLSAPVPRGRKGKKMKTQSSSFDIHKAEWLRKHNPEHILQDDGYKKHLK
HHCNKVLLRVRMLYYLKQEVIGSLAQKVLDGADSSEIKIWVPDPDHSELPALWWDAIADK
CLLLGIFKHGYEKYNTIRADPTLCFLERVGRPDEKAIAAEQRANDLMDGDVDDPEYKPAP
ALLKDDMEDDASSPGDLVVSDNAGDAAPVMEGQSAYWPSPSVLTARLRRLITASQRFTKT
RQIMHIHQAQSQFQTQSQQPMLLPTAFCPLPPMLNDTLNPKMAAKIERQQRWTRREEADF
YRVVSTFGVVFDPSLGRFDWTKFRAMARLHKKTDESLQKYLCAFTAMCRRVCRLPPKEGD
SAVDPSLTIQPITEERASRTLYRVELLRQVREQVLRHPLLYERLSLCQMSSDLPVWWEAG
AHDHDLLIGAAKHGVSRTDYHILRDPELSFMAAQRNYSQSKAAQQQQQAHLPTPHLHPQY
QAASAVLTGSPMPMSTQKDADPCGVIPKVEPASEEEEEETKERRGESWSAPEMPSAPSAP
SVLEEKPVLPVRDMEKQMVAARTKPLTPNSSEKKPKKASKRGRKEARRGSGSDSDGSSSS
SSSRSSSSSSSSSSSSRSGSSSSSSSTSCSSGSSSSSSSSSSSSDDSESEGEEEKKKVPA
AASVKGFDEDSVASLSTARDEAQDAHLSENGISSNSSHPFQGGGYMLAASYWPKDRVIIN
RLDSICQAVLKGKWPGPRRVYEPGSAVASFYTTKLLDNANNSVSEDPSASPQGSKVTKHV
AENKEFSVKLNDQEGGLKLTFQKQGLPLKRPLEPEEGPQAQQQYLARLQELQNASDTGLA
DITKPQSNFQTVSPGLTSQMRLNGALDGQPAVKKRRGRKKNVEGMDLLFMNRNQTPAVSH
QMPPGWGGIGQVGMPAAAMPNYSPSTSQVPADTESRVPVINLKDGTRLAGDDAPRKKDLE
QWLNEHPGFVADTGAFIPGVNKMQMQFHFQDGRPKQKRHRCRNPNKIDVNSLTGEERVQI
INRRNARKIGGAFAPPLKDLSRFLQENPEYGVPPEWADVVKQSGYLPESMFDRILTGPIV
PEEVSRRGRRPKNPLAKMAAAAAAPNPAASAFGLNPVLANGLLPGMDLTSLQAFQQNLQS
LQSLQLTAGLLGLPSDTSNLAASNLAAMFPMMLSGMAGMPNLLGVSNLLGKPAQEGAGGS
EEKTKGISSSATDETSASETPSHTSDNKGERTEDSNGTPSSTSSSSSSATTTQSASAASA
ATSQPLSLNPLLLSSMLYPGMLLTPGLNLPVSATQQPSSNNDPSTLPSAAAAPPPATPQS
SLQGAEQLQAQKDREEDDEEEDDDEVPEETVDEEEDEDEPSDPKENCDLKGSAKADSSSS
ESGSSSSSSDNSDSSDED
NT seq
9057 nt
NT seq
+upstream
nt +downstream
nt
atggacttttttgacgactctaacctctttgaaggaggtttggaaggattgggggaagat
ggcttccctccagggccatcacttgtggatgagctcaacctcagcgctgattttgaacct
ctccaagtggagacacttggcccggtgaagcatcaagacatgatgcctggagtctcggct
caacagcacttacccaattacagtcagcaaatgggtcattatggtggaatcaagcagcag
aaccctatggcacaggccttttctggttctcaaagcacaggatgtgacatcatggcggag
cagcttggccagttccacaacaccgccattggtcaagtgcctcaatcgaatggattgttc
tgcaacagtggcagtccaatgtggggtaatcaagaccagaatggcaacatgttccacccc
ttatctcaacagcaacggcagcagctttgtcatcaacaattgcacaaccagcaacttcat
gtcagacagcacccacaacagcaaaacctctcctgccgtcatcaacaggaggagcagcaa
caccgaatgcgacagcagcagctgcagcagcaaagtcatcatcagcatctgttaaaccag
caccgacaaattaacacatcagttgtttccctgcagcaacagcatcacaatttctctttc
catcagggaggccagtccaacaaccaacagcaagtacaacattctgagcagccaatccaa
caccaaatccctcagagagaagcacagttttattcaagggttcatccaaacaagtcttat
ttggaaaatgcttctttgagtaggacttcattaccaatacagcagcaggatagctaccat
gcattaaggagaggtcaagccttccccggatcaggacttgaagactccatcctatcacac
ccgacacattcatcatcaagagttcagtccctttccacttgctctgtcacttctgctaat
gcttaccaaccagctccataccctgcttaccccggggagtcagaaatacccaattttggt
cagctgtcttcatccacagccacagtgtctgggcccactgccacctcatctctcacttct
acagtgcctgggctctcaggggcagcatgccagttccagtccccagctcttatgcgtcag
ctgcacactaaaacaaccgtcaaccaggcagacgagtgctcctttcaggtcttggggtgc
tctgttgagtcccagaaaaacttcaagtcatctgagatgtttggtgaaacaatgaagtgt
taccccaacgttggcaggcccctgccctctgagcagcctcagtgctgcggggctatcaac
actaatggataccaagccttgggagatgggcttttggcatcagaagcccaggattcaaag
ctggagagcctggaaactactgacctgctacctgacctcctgccccagctggaggacact
tttaaggctgaaccatggatagaagccagtcagaaggggtgtgatgacagcaatccaaca
tctagagaatacaaagctgaaaatcctcgaaagaacatcaatggtccgggaagccaggtg
tgcgtcctcagtcctccagtgaagagcaactcgtcgtcttcgtcttcttcctcttcgtcc
tcgtcatcgtcctcctcgtcatccagctcctcgtcggagaagagggtacctcggaggacg
cctcaacagatggagtcaactctactggacaagcaggagaaggcaaacagaataatatca
gaggctattgctaaggcccggcaacgaggggagaagaacatcccgcgggtcatgagcccc
gagagtttccccagttcttctgctcagttcaagacccaccgtgaccgtgggcacaaagga
aacggcaaggcccgatccaaagacaagtcatctaagagggcctgcattatacagtccaag
ccaaagcagaaagccaagatcgggaaaattgtgatcaagattggaaaaaagaagaaaaga
aagcaggagtcctcagaggaggagtcggatgaagaccctccccttcgacacacttctaaa
gatgacgactcgaagaggcgctccaacagacaggtgaagcgcaaaaagtacactgaagag
ctggagaccaggctgtctgatgaagaagtcaaggtgattgttaaagccaagaaaagcaac
acagcagcatccaaggaaccgtccgtgcagctgtttgttgagaatccttctgaggaggac
gctgcagtcgttgataaaatcatgtcttctcgagttgtgaagaaggaggtctccccagga
gtgatggtagaagtggaggagttttttgtaaaatacaaaaactactcctacttgcactgc
gagtgggccacagagcagcagctggagaaggacaagaggattcagcagaagatcaaacgc
ttcaagatgaaacaagcacagagggccctcttctttgcagacatcgaggaggaccctttt
aatcctgattatgtagaggtggaccgggtactagaagtgtcgtattgtgaggacaaagac
acggggcaggaagtggtgtattacctggtgaagtggtgctccctgccttatgaggacagc
acctgggagctgaaggacgatgtggatcaaagcaagattgaggagtttgagcagctgcag
gcagtcaagccagactctcggagggtggagcggcccccagccaacctgtggaagaaaagg
gagcattccagggagtacaggaacggaaacatgctcagggactaccagctggagggggtc
aactggctcctgttcaactggtacaacagacgcaactgcatcctggcagatgagatgggc
ctgggaaaaaccatccagtccatcacattcctggaggagatttatcgcattggcatcaag
gggcctttcctcatcattgcacccctctccaccattgccaactgggagcgcgagttccat
acttggacccacctcaatgtcatcgtttatcacgggagcgtagtcagtaggcagatgctc
cagcagtacgagatgtacttcagggatgctcagggtcgtgcgatacgaggcgcctacagg
ttccaggctgtcatcaccacgtttgagatgatcctgggcggctgccctgagctcaacgcc
atcgagtggcgctgcgtcatcatcgacgaagcccaccgcctcaagaacaaaaactgcaag
cttctggaaggcttcaagctcatgaatttggagcacaaggtcttgctgacgggtacgcct
ctgcagaacacagtggaggagctgttcagcctcctccacttcctggagccaacgcgcttc
ccctcagaaaacaccttcatgcaggagtttggagacctcaagaccgaggagcaggtgcag
aaactccagggcatcctgaaacccatgatgctgcgtcgtttgaaagaggatgtggagaag
aaactggctcctaaagaggaaactatcattgaggttgaactgaccaacatccagaagaaa
tactatcgtgccatcctggagaagaacttttcctttctggctaaaggagcgggccaggca
aacatgcccaatctggtcaacacaatgatggaactaagaaagtgttgcaaccacccctac
ctcatcaaaggagcagaagaaaagattctagaggacttcagggaagttcacaacccctct
gcccccgactaccaccttcaggcaatggttcagtctgctggaaagttggtcctcatcgat
aaactgctgcctaagatgaaggctgggggccacaaagtgctcattttctctcaaatggtg
cgctgtctggacatcttagaagactacctcattcaaagaaggtacttgtatgaacggatt
gatggtcgtgttcgtggaaacctgcgacaggctgctattgaccgcttcagtaagcccgac
tcggaccgcttcgttttccttctctgcacaagagcgggaggcctgggaatcaacctcact
gcagccgacacctgcatcatctttgactccgactggaacccacagaacgacctgcaggct
caggctcgctgccatcggatcggtcagaacaaggcggtaaaggtgtaccgactggtcacc
aggaattcatacgaacgggaaatgtttgaccgagcgagcctcaagctgggcctggacaaa
gctgtcctgcagagcatgagcggccgggataacagcctgggaggaggctccgggggaggc
gctgtgcagcagcagctgtccaagaaggagattgaggatctgttgcggcgtggcgcctac
ggggccatcatggatgaagaggatgaaggggccaaattctgtgaggaggacattgaccag
atcctccagcggcgaacaaagaccatcactatcgagtctgagggacgtgggtccactttt
gccaaggccagtttcgtggcatctggaaaccgcacagacatctctctggatgaccccaat
ttctgggacaagtgggctaaaaaggctgacattgatatggaaatggtcaacggcagaaac
agtttagtgatcgacacacctcgtgtcaggaagcagaccaggccattcagtgccaccaag
gacgagttggcagagctctcagagggagaaagtgacggcgacgaaaccaaacctaaactc
aggcggaacgatcgcctcaacagctacggccgcacggaatgcttcagagtagagaagaac
ttgcttgtgtacgggtggggtcgctggaaggatattctcaaccacggtcgttttaaaaaa
cagctgactgagtgggacgtagagtccatctgcagggccctgctggcttactgcctggtc
cattaccgtggagacgacaaaatcaagagcttcatgtgggacctcattgccccgaccgag
gatggacgcacaaaggagctgcagaatcacctgggcttgtcagctccagtcccacggggc
aggaaggggaagaagatgaagactcagtccagctcttttgacatccacaaggcagagtgg
ttgaggaagcacaacccagagcatattcttcaggacgatggttacaagaagcacctgaaa
catcactgcaacaaggtgctgctcagggtcagaatgctctactacctaaaacaggaggtg
atagggagcctggcccaaaaggtgctggacggcgcggactccagtgagataaagatctgg
gtgccagatcccgaccattcagagctgccggctctgtggtgggatgcaatcgctgacaaa
tgcctgcttctcggcatcttcaagcatggttatgaaaagtacaacactattcgtgcagac
ccaactctctgcttcttagagcgcgtgggacggcccgacgagaaggcaatcgctgccgaa
cagagagccaacgacttaatggatggggatgtggatgatccagagtacaagcctgctccg
gctctgctaaaggacgacatggaggatgacgcctcctctcctggagatttagtcgtctct
gataatgctggagatgccgcccctgtgatggaaggccagagtgcctactggccctccccc
tctgtgctgacagcccgacttcggcggctgatcacagcctcgcagcgcttcaccaagacc
cggcaaatcatgcacatccaccaggctcagtctcagttccaaactcagtcccagcagcca
atgcttctgcccactgcattctgtcccctgcccccaatgctcaacgacacactcaacccc
aagatggctgcgaaaattgagcgtcagcaaaggtggaccaggcgcgaagaggcagatttc
tatcgagtggtttccacattcggggttgttttcgacccaagcctcgggcgcttcgactgg
accaagttcagagccatggctcgactgcacaagaaaaccgacgagagccttcagaagtac
ctctgcgccttcaccgccatgtgtcgacgggtgtgtcgcttgccgccaaaagagggagac
tcggctgtggacccgtctctgaccatccagcccatcacggaggagcgagcttcccgcacc
ctgtaccgagtcgagctgcttcgtcaagtccgggaacaggttctcagacatccactgctc
tacgaacgcctgtcgctgtgtcagatgagctcggatttgcccgtgtggtgggaggctggc
gctcacgaccatgacctgctgatcggggctgccaagcacggcgtgagccgcacagattac
cacatcctgagagaccctgagctcagcttcatggcggcccagcgcaactacagccaaagt
aaagctgcccagcagcagcagcaggcacatttacccaccccccatctgcaccctcaatac
caggcggccagcgcagtgttaacaggctctccgatgcccatgtccactcagaaagacgcc
gatccctgtggggttatacccaaagtggagccagcctcagaggaggaggaggaggagact
aaggagagacgaggggagagctggagtgcaccggaaatgccatcagctccctcagctccc
tcggttctggaagaaaagcctgttttaccagtgagggacatggagaagcagatggtggcc
gcacgaaccaaaccactcacacccaactcgtctgagaagaaacccaaaaaggccagcaag
aggggtcgcaaggaggcccgacgcggctccgggtcggactccgacggttcctcttcaagc
tcatcatcccgctcttcttcatcctcctcatcatcttcctcctcctcacgctccggatcc
agctcctcttcttcatcaacctcttgctcttccggctcctcgtcgtcctcctcttcctcc
tcatcctcttctgatgacagtgaaagtgagggggaggaggagaagaagaaagtgcctgca
gcagcaagcgtgaagggttttgacgaggacagcgtggcgtctctgagcaccgcacgggat
gaagcacaagatgcccatttgtcggagaacggcatctccagcaattcatctcatcccttt
cagggaggagggtacatgctggctgcatcgtactggccaaaggaccgagtcattatcaac
cgcctggacagcatctgccaggcagtgctcaaaggcaagtggccaggcccacggcgggtc
tatgagcccggcagcgcagtggcctccttctacaccaccaagctgctggacaatgccaac
aacagcgtgagcgaggacccctctgcctcgccacaggggtcaaaggtgaccaagcatgtt
gcagaaaacaaggagttctcagtaaaactcaacgatcaggaagggggtctgaagctgacc
ttccagaagcaaggtctacctctgaagaggcctttggagcccgaagaaggcccccaggcc
cagcagcagtacctggcccggcttcaggagctgcagaacgcttcggacacaggactggct
gacattactaagcctcaaagcaacttccagacggtttctccaggtcttaccagtcagatg
aggctgaacggagcactcgatggtcagccggcggtgaagaagaggaggggcaggaagaag
aacgtggaggggatggacctgcttttcatgaacaggaatcaaacccctgctgtttcccat
cagatgcctccaggttggggaggtatcggtcaggtgggcatgcctgcagccgccatgcca
aactacagcccgagcaccagtcaggtccctgcggacacggagagcagagttcctgtcatt
aacctcaaagacggcacccggctcgctggagacgatgctcccaggaagaaagatctggag
caatggctcaacgagcatcctggcttcgtggcagacaccggggccttcattcccggagta
aataagatgcaaatgcagttccacttccaggacggtcggccaaaacagaaaaggcaccgc
tgcaggaaccccaacaagattgatgtcaatagcctgacgggagaagaaagggtccaaatt
atcaacaggagaaatgcacgcaagattgggggagccttcgctcctcctctgaaggatttg
tcccggttccttcaggagaacccggagtatggagtccctcctgaatgggcggatgtagtc
aaacagtcgggttaccttccggagagcatgtttgatcggatcctgacgggacccatcgtt
cccgaggaggtcagccgacgaggacgccggccgaagaatcctctggcaaagatggctgca
gctgcagcggcgccaaatccggctgcctccgcctttggcttgaacccggtcttggctaac
ggcctactccctggtatggacctcaccagtttgcaggctttccagcaaaacctccagagt
ttacagtccctgcagctcactgctggtctcctgggcctgccgtctgacaccagcaacctg
gctgcaagtaatttagctgctatgtttcccatgatgctctctggtatggctggaatgcca
aacctgctgggtgtgagcaacctgcttgggaaaccggctcaggaaggagcaggaggctct
gaagagaagacaaagggaatcagcagcagtgcaacagatgagacgtctgcctctgaaacc
ccctctcacacctcagacaacaaaggagaaaggacagaggactcaaacgggactccttcc
tccacttccagctcttcttcctctgccaccaccacacaaagtgcttcagctgcatctgca
gccaccagtcaaccactttctcttaaccctttgttactctccagtatgctttacccaggg
atgcttctcactccaggccttaaccttcccgtgtctgccacacagcagccgagctcaaac
aatgacccttccacccttccgtctgctgctgctgctcctcctcctgcaaccccccagtcc
tcactgcaaggggcagagcagcttcaagcgcagaaggatcgagaggaggacgacgaagag
gaggacgacgacgaggtgccagaggagactgtagatgaggaggaagatgaggacgaaccg
tcagatccaaaagaaaactgtgatctcaaaggttcggccaaagcggattcgtcttcgtca
gagtctgggagctcctcctcatcttctgataattcagactcgagtgacgaggactga
DBGET
integrated database retrieval system
