Oryzias latipes (Japanese medaka): 101162619
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Entry
101162619 CDS
T02443
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ola03021
]
101162619 (taf1c)
Transcription machinery [BR:
ola03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
101162619 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Motif
Other DBs
NCBI-GeneID:
101162619
NCBI-ProteinID:
XP_023816688
UniProt:
A0A3B3HWX0
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Position
12:29161200..29174871
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AA seq
1054 aa
AA seq
DB search
MDHRFPLKLFPSFYNHGPPNSRQKPCAGGWGSYERVIPQEGAGPGSSWSFTSRHQVSGET
WLHAEPVPVPLLSPRSAFLPSVTPPEPADFTEHMQNFFTDHSHDAFGCMSNLLGESFDFA
ETKRKRRQPWESADMSKTKHFLDLLKSGVCQRSYQNRTVTRYCSLLSDVVHDIPPQLLGS
LLHEELAGQRDGVLFSEAAIGGALAFVPFSQSHGCLLYPGGRGLDRLNFHGVALQFQPGS
SVCVDAGSRKPLSFQLKAPIRQISCTSLFSDCCVGVRSDHLCGVWRFSEWSEPRLLQVIN
TREVSTCVNVSPHVLGEVLVAGESGAAELWTVGKGFQKVRVEDSNLYFNAKSPWRWCEFS
AHPRVMLYADRTGAELTDMRVTPSSGSTLFRISSTSECRRGERLILSRYLGDGHPFHHLV
TTQYSAYILDERFPCVPMLKWDHMMASPPVFCHVAASSDSAQGAAARTAKVLLGSHSSQE
MVLLQYSGGRAQASVSRGPPQALLRPRDSLKHLPVQIPHRLQTATGRLSAPAAGLTCILH
RAGGGGREEHMCVLQLTEAGDVFCQTLELLDCSPSGAAAAESSPPRTRTAARQPATPLDS
DSWSHGDAIGPTQATPSAVPETPEGKRGSRKQSSDSSSEGSEYESRRRKLRRMQLEVFMN
DEPETTEERAAGGAEGDEEHCDEDCDQTSSCTQQQTSPKLSSRTLMTWKLWLQKLMRRSC
EEKPRPRWPEHLITKTKVLHLPRSGSGETSEKEQVACLQQKLQACMHGRSLLLHSAVAED
LRVASVPELVNTDVWTDPLSQRLTLSWQGESAWKAWWDEELGLNRDAKMQSLRRKRRRQK
EARRAAGHQWELSHSFTSSCSSQSQLEDLSDSAGCSSTLSQRQWSDTEGPGVPSQLAKRI
QHENQGGSSPSLCDADAPVPAPATTPQRPKDAQSGAQIPDPSQTPSLSQMKGSEVTPANQ
RRTRRPTEDYLSALFPTQDHSFHNDEADTPPGLDTPSSSQLRGSRSVPLRSVRPAPSTSP
FSSVTPSQLFSGSQRGLRPSQASQPKKKRPQMGF
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggatcatcggttccctctgaaacttttcccttcgttttacaaccacggacccccgaat
tcgaggcagaagccctgcgcgggcggatggggcagttacgagcgcgtcattcctcaggaa
ggggcgggtcctggctccagctggtcctttacctccagacaccaggtcagcggggagacg
tggctccacgccgagcctgtgcccgtcccgctcctgtctcccagaagcgcttttctccca
tctgtgacgcctccagagccggcagacttcactgaacacatgcagaacttcttcactgat
cactcccatgatgcctttggctgcatgagcaaccttctgggagaaagcttcgactttgca
gagacgaagaggaaaaggagacaaccgtgggaatcggccgacatgtcaaagacgaagcac
ttcctggacctgctgaagtccggcgtatgtcagcggtcgtatcagaaccggacggtcact
cggtactgcagcctgctgtcggacgtcgtgcacgacatccctccacagctgctgggctcc
ctgctgcacgaggagctggcgggccagagggacggcgtgctgttctctgaggcagccatc
ggcggcgctctggccttcgtcccattctcccagagccacggctgcctgctgtaccccgga
ggccgtggactggaccgcctcaacttccacggagtggcgctgcagttccagcctgggagc
tcagtctgtgtggacgccggcagcaggaagcccctgagcttccagctcaaagcccccatc
agacagatcagctgcacgtccctcttcagcgactgttgcgtgggcgtgcgctcggatcac
ctctgtggagtctggaggttcagcgaatggagcgagccacggttgctgcaggtgatcaac
acccgcgaggtctccacctgcgttaatgtcagcccccatgttttaggtgaagttctggtc
gcaggtgagagtggagctgctgagctgtggactgtcggcaaaggcttccagaaggtccga
gtggaggacagcaacttgtacttcaatgccaagtcgccatggagatggtgcgagttctcg
gctcacccaagagtgatgctgtacgccgacaggacgggggcggagctcacggatatgagg
gtcacgccgtcctcgggcagcacgctgttccggatcagcagcacctccgagtgccgcaga
ggagagcggctcatcctgtccagatatctgggagacggtcacccgttccaccacctcgtc
accacgcagtactcggcctacatcctggacgagcggttcccctgcgttcccatgctcaag
tgggatcacatgatggcgtctccccccgtcttctgtcacgtcgctgccagctccgactcc
gcgcaaggagccgccgccagaactgctaaagtcctgctgggctcccacagttcccaggag
atggttctgcttcagtactcgggaggccgagcacaggccagtgtgagccgaggtcccccc
caggctctcctcagacccagagacagtctgaagcacctcccggtccagatccctcaccgg
ctccaaaccgcaaccggcagactgtctgcgcctgccgcaggactgacatgcatcctccac
agagcaggaggaggaggacgtgaggagcacatgtgtgtcctgcagctgacagaagccgga
gacgttttctgtcagacgctggagctcctggactgcagcccgtcaggagctgcggcagca
gagagctcgccaccgaggacacggacggcagctcggcaaccagcaacgccgctcgactca
gactcgtggagccatggggatgcaatcgggccaactcaggccacgccctccgccgtccca
gaaactccagaaggaaaacgaggctcaaggaaacagtcgtctgattcctcctctgagggc
tcggagtacgagagcaggaggagaaagctgaggcggatgcagctggaggttttcatgaat
gacgagccagaaacgactgaagagagagcagcaggcggagctgaaggtgatgaagaacac
tgcgatgaagactgcgatcagaccagcagctgcactcagcagcagacctcaccaaaactc
agcagcagaactttaatgacatggaaactctggctccagaaactgatgcgaagaagttgt
gaagagaagccccgcccccgctggccagagcatttaataaccaaaaccaaagttctgcac
ctgccaaggtctggttctggagaaacatcagagaaggagcaagtggcgtgtctgcagcag
aaactgcaggcctgcatgcacggacgctcgctgctgcttcacagcgccgtcgccgaagac
ctcagggtggcgtccgtgccagagctggtgaacacggacgtttggacggatccgctcagc
caacgactgaccctgtcctggcagggcgagagtgcatggaaggcgtggtgggacgaagag
ctggggttgaaccgcgatgccaagatgcagagtctgaggaggaagaggagaaggcagaag
gaagcgaggagagcggcggggcatcagtgggagctgagccacagcttcacctcctcctgc
agcagtcagtcacagctggaggacttgtcagactccgccggctgctcttccacattgagt
cagaggcagtggtctgacaccgaaggtcctggggttccgtcccagctggctaaacggatc
cagcatgagaaccaaggaggttcaagcccctccctctgtgacgctgacgctccagttccc
gcccccgccaccacacctcagagacccaaagatgcacaaagcggtgcgcagatccccgac
ccgtcccaaaccccctccctgtcccagatgaaaggctctgaggtcacaccagccaatcag
aggaggaccaggcgacccacggaggactacctgagcgctctgtttccaacacaggatcac
tcatttcacaatgacgaggctgacacgccccccggactcgacaccccctcttcatctcag
cttcgcggctctcggtcagtccctctgagaagcgtcaggccggctccgtccacaagtccc
ttctcctccgtgaccccctcccagctcttctcgggttcacagagggggctgaggccgtca
caggcgtcccaacccaagaagaaaaggccccagatgggattttga
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