Oryzias latipes (Japanese medaka): 101162642
Help
Entry
101162642 CDS
T02443
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04382
Cornified envelope formation
ola04510
Focal adhesion
ola04512
ECM-receptor interaction
ola04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101162642 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101162642 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101162642 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
101162642 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ola04147
]
101162642 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
ola00536
]
101162642 (col4a2)
Exosome [BR:
ola04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
101162642 (col4a2)
Glycosaminoglycan binding proteins [BR:
ola00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101162642 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
101162642
NCBI-ProteinID:
XP_011488241
LinkDB
All DBs
Position
21:25894585..25976590
Genome browser
AA seq
1663 aa
AA seq
DB search
MRHCGQRNLWLPLLCVYIVILTSGVQAGGKKHSGPCGGRDCSGGCKCFPEKGGRGQPGPL
GPQGPQGPKGRPGDLGIQGQKGQKGDQGPGGVIGPKGSAGMTGVPGFTGNDGIPGHPGQG
GPRGKPGADGCNGTKGEPGIPGIPGDYGIQGAAGSPGRKGEKGDNLDVKVYMQRFRGDQG
APGFDGPFGPDGPKGGEGTRGPTGPKGPPGPSGPPGPKGTMTKVLKGVKGEQGDVGQPGP
PGNDTRQQIKPPSGPPGEKGQKGQVGEVDIITGEPGIPGPPGPRGEMGRNGQPGLEGEFG
ERGPTGIDGVKGVRGEPGVLILSGDPWSSGVGAPGPPGEQGPLGERGPVGDQGIPGRPGP
PAYKTQQEVYTFGPLGFKGEQGDKGRQGEPGFPAFRAGPPGADGRPGDRGPPGPTITWAE
YYKGPPGPRGRPGTAGLKGPKGDHGDCECRDLNARRGLPGPSGQHGDPGMIGEFGREGDF
GDPGPRGVDGFPGSPGLPGPLGIKGRKGDITFATEKGFPGDSGDPGMDGFPGQLGTPGLH
GRPGPPGFPGPPGEGPWGEPGDKGFPGRSGRPGVRGISGEPGQVFPGQKGLQGLPGDDGL
PGYDGVPGPPGTPGGCSPTSGGLGDVTGLCDTLPGLPGAPGLPGSPGLPGFPGTQGLKGP
QGFDGVGGEKGEQGDRGNGGSPGPAGFVGQRGDIGIPGAKGLVGSPGVPGAHGRYGPKGE
KGVHGEILGASAGPQGDPGLPGLQGLKGQDGEPGLPGYEGMGGMPGMIGFKGEKGSLGLS
GEEGKPGIAGLYGFPGEPGTAGPPGPSGATGDPGLPGERGTDGDPGPPGPVGLKGMPGEF
GEDGSPGEPGSPGDPGWPGTTGRPGPPGIKGGKGSSGMVGFDGKKGTPGLKGIIGVKGDA
GLPGEQGLKGTMGVPGEKGDRGVKGPPGEKPQIPLHIIVDMKGVKGEHGSQGNPGFTGPR
GSKGLPGVPGFDGVHGSPGDPSNDKGQLGDPGLQGLPGIKGMPGPTGNRGVTGFEGMSGE
KGIKGSAGAYGASGENGRKGAKGDAGPRIDLPGSPGLRGEVGLPGNPGLKGLFGSPGDQG
GSGFDGIVGIKGIFGDPGIQGFPGSDGQKGAPGYQGQKGFSGLPGKDGLPGFPGFPGVKG
YPGLKGLHGLHGLKGQKGISGTAGLNFPGQAGNPGVKGQKGESGNPNDQQGDSGIPGFKG
FQGPTGEYGLPGLPGLRGPSGPDGIPNEPGSPGDPGFQGPAGFQGLPGARGVPGSDASPG
QRGEPGLNGFPGFPGNQGFRGDPGPTGFRGPHGIFGKKGVKGEQGLMGIPGTTGPKGERG
QTGFKGNTGLPGFPGQPGSQGPPPIPIRVPGERGPSGPRGLQGPLGIRGEPGPQGPPGDT
GFIGPIGQKGMPGVSGTPGTPGFRGNFGQMGHPGLEGMEGNRGNPGIPGIPGMPGRSISV
GYLLVKHSQSEEKPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLAGSCLPRFSTMPFLY
CNPGDICYYASRNDKSYWLSTTAPLPMMPVEENEIKPYISRCSVCEAPSVAIAIHSQGID
IPQCPAGWRSLWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTLPFIECNGAKGTCHYF
ANKHSFWLTSIDHSFHANPAPETLKAGQLRSRISRCQVCMKNL
NT seq
4992 nt
NT seq
+upstream
nt +downstream
nt
atgcgccactgtggacagagaaatctttggttgccgctgctctgcgtctacatcgtcatc
ctcacttcaggagtgcaggcaggcgggaagaagcacagcggcccctgcggaggaagagac
tgcagtggaggctgcaaatgtttcccagagaagggaggccggggtcagcccgggcctctt
ggtccccagggcccgcagggccccaaggggcgaccgggggatctgggcatccaaggccaa
aaggggcagaaaggcgaccaaggacctggtggcgttataggccctaaaggcagcgcggga
atgactggtgtaccggggttcactgggaacgatgggattcctggtcatccaggccaaggc
gggcctcgggggaagcccggagcagatggttgcaatgggaccaaaggagaaccagggata
ccagggatacccggcgattatgggattcaaggagctgctggatcgccagggaggaaggga
gaaaaaggagacaacctggatgtcaaagtgtacatgcagcgttttaggggagatcaaggt
gcgccaggattcgatggaccttttggacctgacggaccaaaaggaggtgaaggcaccagg
ggcccaacaggaccaaagggtcctccgggtccatcgggtccccccggaccaaagggtacc
atgactaaagtcctgaagggagtcaaaggagagcaaggagatgttggacagccaggccca
ccaggaaacgacactcggcagcaaataaagccgccctctggaccacctggagagaaagga
caaaaaggacaagtaggagaagtggacatcattacaggagaacccggcataccgggacca
ccgggacccaggggggaaatgggtagaaacgggcaacctggactagagggtgaatttggg
gagagaggacccactgggattgatggtgtcaaaggagtccgaggtgaaccaggagtactg
atcctatcaggagatccgtggtcttcaggagttggtgcccctggacctcctggtgagcaa
ggcccactaggagagaggggtccagttggagatcaaggtatccctggacgtcctggacct
ccagcgtacaaaacccagcaagaagtttatacgttcggcccattgggtttcaaaggagaa
caaggagacaaaggccgacaaggtgaacccggatttcctgccttcagggcaggcccccca
ggagccgatggacgtccaggggacagaggccctcctggacccacaataacatgggctgaa
tactataagggccccccagggccgaggggaaggcccggcactgcagggctgaagggaccg
aaaggtgaccatggagactgtgagtgccgtgacctaaatgctcgccgcggtttacccggg
ccttccgggcaacatggcgatcctggaatgatcggagaatttggtcgcgagggcgatttt
ggagatccaggtcccagaggagtggacgggttccctgggagccctggccttcctggtccc
cttggcattaaaggtcgaaaaggagacataactttcgctacagagaaaggatttcccgga
gactctggtgaccctggcatggatggatttcctggacagttgggaactcctggactacat
ggccgccctggccctcctggtttccctggtcccccaggagaaggaccctggggggagcct
ggagacaagggttttccaggtcgttctggaaggcctggtgttcgtgggatctcaggggaa
ccaggacaggtctttccaggccaaaaaggcctacaaggtttacctggagatgatggcctc
cctggatatgatggagtgccaggaccacctggaactccaggtggctgtagtccaacgagt
ggaggactgggggatgtaacaggcctctgcgacactcttccaggacttcctggtgctcct
ggacttccaggaagccctggattaccaggttttccaggaacccaaggcttgaagggtcca
cagggttttgacggggtcgggggggaaaaaggagaacaaggagatcgaggcaatggtgga
agtcctggacctgcaggttttgttggccagaggggtgatattggcattcctggtgccaaa
ggtttagttgggtccccaggtgtaccaggtgctcatggtcgatatggacctaaaggtgag
aagggcgttcatggtgaaatactgggagcctcagctggaccacaaggtgacccggggctc
cctggactccaaggacttaaaggccaagatggagaaccaggactgccaggctatgaagga
atgggcggcatgcctggtatgattggtttcaaaggggagaaaggctctctaggtctgtcc
ggggaggagggaaaacctgggattgcaggactttatggcttccccggtgaacctggaact
gcaggcccaccggggccaagtggtgcaactggagacccaggactcccaggagaaagggga
actgatggagacccaggtcccccaggcccagtaggactgaaaggaatgccaggtgaattt
ggagaagatggatcacctggagagccgggctcaccaggtgacccgggatggcctggcaca
accggacgccctggacctccaggaataaaggggggcaaaggatcttctggtatggtaggt
tttgatggaaaaaagggcactcctgggttaaaaggaataattggagtcaaaggagatgct
ggactacctggagagcaggggcttaaaggaacaatgggagtacctggagaaaaaggtgat
cgtggggtgaaaggtccacctggcgagaagcctcaaattcctcttcacatcatcgttgac
atgaagggggtcaagggtgaacatggatctcaagggaatccaggtttcactggaccaaga
ggctccaaaggtttgcctggggtgccgggatttgatggagtccatggtagtcctggagat
cctagcaatgacaaaggacaacttggtgatccaggtctgcaggggttacctggaatcaaa
gggatgccggggccaactggaaatcggggggttacaggttttgaggggatgtctggcgag
aagggaatcaaaggaagcgctggcgcctatggtgcatcaggggaaaatggcaggaaagga
gcaaaaggtgacgcaggtccccgtatagaccttccaggaagtcctggattgagaggagag
gttggacttcctggaaacccaggcttgaaaggactttttggaagccctggagaccagggg
ggttctggttttgatggtattgtgggaataaaaggaatcttcggtgatcctggaatacag
gggttccctgggtcagacggccagaaaggagctcctggttaccagggccagaaaggtttt
tctggattacccggaaaagatgggcttccaggatttccaggatttccaggagtcaaaggt
tatcctggccttaagggtctccatggactgcatgggttaaaaggacagaaggggatctct
ggaacagcaggtttgaattttcctggacaagctggcaacccaggagtgaaaggacaaaaa
ggagaaagtggtaacccaaacgaccaacagggagattcaggaatcccaggtttcaaagga
ttccagggaccaacaggtgaatatggcctgccaggattaccaggactccgtggtccttct
ggaccagatggtataccaaatgaaccaggatctccaggggatcctggctttcaaggacct
gcaggattccaaggtttacctggtgccagaggagttcctggctctgatgcttctccgggg
cagaggggtgaaccaggattgaatggttttcctggatttcctggtaaccaaggattcaga
ggagatccaggcccaactggattcaggggcccccatgggatttttgggaaaaaaggagtg
aaaggggagcagggattgatgggaattcctggcacgactggtccaaaaggagagagagga
caaactggttttaaaggaaacactggacttccaggttttcccgggcagccaggaagtcag
ggtcctcctccaattccaatcagagttccaggggagaggggcccttctggaccacgggga
cttcaaggaccactggggattagaggagaaccaggaccccagggtccacctggagataca
gggtttattggacccattggacagaaaggcatgccgggagttagcggtacaccagggacg
cctggattccgtgggaactttggccagatgggccaccctggtctggaaggcatggaaggt
aaccggggcaaccctgggatacctgggatacctggtatgcctggtcgcagcattagtgtg
ggatatttgctggtgaagcacagtcagtcagaagaaaaacccatgtgtcctgtgggaatg
tccaaactgtgggacggctacagcctgctgtactttgagggccaggaaaaggctcacaac
caggaccttggattggcaggctcatgccttccacggtttagcaccatgcccttcctgtac
tgtaaccctggagacatctgttactatgccagcagaaatgataaatcctactggttgtca
actactgctcctcttcccatgatgccagtagaggaaaacgagatcaaaccatatatcagt
cgctgctcggtctgtgaagctccatccgttgccatcgccatccacagtcagggcattgac
atcccccagtgtcctgcgggctggcgcagtctgtggatcggctattctttcctcatgcac
acagcagcaggaaatgaaggaggtggtcagtccttatcgtcgcctggctcctgcctggag
gacttccgcacattacccttcattgagtgtaatggggccaaaggcacatgccactacttt
gctaacaaacacagcttctggctgacctccatagatcattcctttcacgctaatccagcg
ccggagacgctcaaagcgggtcaacttcggtcccgcatcagccgctgccaagtctgcatg
aagaacttgtga
DBGET
integrated database retrieval system
