Oryzias latipes (Japanese medaka): 101162671
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Entry
101162671 CDS
T02443
Symbol
cstf3
Name
(RefSeq) cleavage stimulation factor subunit 3
KO
K14408
cleavage stimulation factor subunit 3
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101162671 (cstf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101162671 (cstf3)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
101162671 (cstf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
NRDE-2
TPR_6
TPR_19
Motif
Other DBs
NCBI-GeneID:
101162671
NCBI-ProteinID:
XP_023809288
UniProt:
H2M1G4
LinkDB
All DBs
Position
3:23236381..23245060
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AA seq
714 aa
AA seq
DB search
MSTEGAAEQTEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVSQF
PSSGRFWKLFIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLAYVRETKGKLPSYKEK
MAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMI
NIEQLWRDYSKYEEGINVHLAKKMIDDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN
SPQEAVQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYL
EQSSKLLAEKGDMNNSKLFSDEAANIYERAIGTLLKKNMLLYFAFADYEESRMKFEKVHS
IYNKLLAIEDIDPTLVYTQYMKFARRAEGIKSGRTIFKKAREDPRTRHHVYVSAALMEYY
CSKDKSVAFKIFELGLKKYGDIPEYILAYIDYLSHLNEDNNTRVLFERVLTSGSLSAEKS
GEIWARFLAFESNIGDLASILKVERRRFTAFKEEYEGKETALLVDRYKFMDLYPCSASEL
KALGYKDVSRAKLASMLPETVVAPSVPVLKDEVDRKPEYPKPDTNQMIPYQPRHLAPPGL
HPVPGGVFPVPPAAVVLMKLIPPPTCFTGPFVQVDELMETFRRCTLPETVDAAVELITGR
HPDAGGEGNGSMENHTITKSLKRPNADSDEEDDKGAVAPPIHDIYRARQQKRIR
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacggagggagcagccgaacagactgagtatgttcctgaaaaggtgaagaaggca
gagaagaagttggaagaaaacccatatgaccttgacgcttggagcattctgattcgagaa
gcacagaaccagcccatagataaagcaaggaagacctatgaacgacttgtgtcgcagttc
ccaagttctgggaggttctggaaacttttcattgaagctgagatcaaggctaaaaactat
gacaaagtagaaaagttgtttcagagatgcctcatgaaagttttgcacatcgacctgtgg
aaatgctacctcgcatatgttcgagagaccaaaggaaagcttcccagttacaaagagaag
atggcccaagcgtacgactttgcccttgataagattggcatggagataatgtcttatcag
atttgggtcgactacatcaactttctgaaaggagtggaggctgtgggctcgtatgcggag
aaccagcggatcactgcagtccggagggtgtaccagagaggctgcgtgaaccccatgatc
aacatcgaacagctgtggagagattatagcaaatatgaggagggaatcaatgttcacttg
gcaaaaaaaatgatcgatgaccggagtcgagactacatgaatgccaggagggtggccaag
gagtacgagaccgttatgaagggactagacagaaatgccccctcagtccccccccagaac
tccccccaagaggcagtgcaggtggacatgtggaagaagtacatccagtgggagaagagc
aacccgctgcgcacagaagaccagacgctcatcacaaagagggtgatgtttgcctacgag
cagtgcctgctggtgctgggccaccatcctgacatctggtacgaggctgcacagtacctg
gagcagtccagcaaactgctggcagagaagggggacatgaataactctaaattgttcagt
gacgaggcggctaacatctatgagcgtgccatcgggactctcctgaagaagaacatgctc
ctttacttcgcatttgccgactacgaagagagtcgcatgaagtttgagaaagtccacagc
atttataacaaactgctggccatcgaggacatcgaccccaccctggtctacacccaatat
atgaagtttgccaggagggcggagggcatcaaatcgggtcgtaccatctttaaaaaggca
cgggaggatccccgcacacgtcaccacgtgtacgtgtctgcggcgctgatggagtattac
tgcagcaaagataaatcagtggcctttaagatttttgaactcggtttgaagaagtatgga
gacattccagagtacatactcgcatacattgattacctctcacaccttaatgaggataac
aacaccagagttctgtttgagcgtgtcctcacctcaggaagcttatcagctgaaaagtca
ggtgagatctgggctcgcttcttggccttcgagagcaacatcggtgacctggccagtatc
ctaaaggttgagcgcaggcgtttcactgccttcaaagaggaatacgagggcaaagagaca
gctctgctagtggacagatataaattcatggacctgtatccctgctctgccagcgagctc
aaagcgcttggatacaaggacgtgtcccgtgccaaactggcatcaatgctcccagagacc
gtggtagcaccatcagtgcctgtgctaaaagatgaagttgaccgtaaaccagagtacccc
aaaccagacaccaatcagatgatcccttaccagccacgtcacctggcccctccaggctta
caccctgttcctggtggagttttccccgtccccccagctgctgtggtcctcatgaagttg
attcctccacctacctgtttcactggtccttttgttcaagtggatgagctcatggaaacg
ttcaggagatgcacacttcctgagactgtggatgctgctgtagagctgatcactggcaga
catcccgatgcaggaggcgaaggcaacggatccatggagaaccacaccattaccaagtca
ctcaagaggccaaacgcagactcggacgaagaggacgacaaaggcgccgtggctccgccc
atacacgacatctaccgcgcccgccaacagaagaggattcgataa
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