Oryzias latipes (Japanese medaka): 101162687
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Entry
101162687 CDS
T02443
Name
(RefSeq) thrombospondin-4-B
KO
K04659
thrombospondin 2/3/4/5
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04145
Phagosome
ola04510
Focal adhesion
ola04512
ECM-receptor interaction
ola04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101162687
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
101162687
09144 Cellular community - eukaryotes
04510 Focal adhesion
101162687
09142 Cell motility
04820 Cytoskeleton in muscle cells
101162687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ola04131
]
101162687
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ola04147
]
101162687
00536 Glycosaminoglycan binding proteins [BR:
ola00536
]
101162687
Membrane trafficking [BR:
ola04131
]
Endocytosis
Phagocytosis
Opsonins
101162687
Exosome [BR:
ola04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
101162687
Exosomal proteins of colorectal cancer cells
101162687
Exosomal proteins of bladder cancer cells
101162687
Glycosaminoglycan binding proteins [BR:
ola00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101162687
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
EGF_CA
COMP
EGF_3
cEGF
Laminin_G_2
EGF
Motif
Other DBs
NCBI-GeneID:
101162687
NCBI-ProteinID:
XP_004072673
LinkDB
All DBs
Position
9:complement(13819995..13829398)
Genome browser
AA seq
956 aa
AA seq
DB search
MRGMCGRAVALSLVLQQLVLTVTAQGIVYDLLVSPDCLPDLLQGSLKNKGRDEAFLLSSF
RLFNKAPTSLFSVYNPKDNNKYLDLSVQAKLNKVTLRYQKTDGRFGTTSFNHPTLADGQV
HHVMLHARGLQRGPPRLDMYVDCRLVHTLNDLPAAFGSLPPGPNKVALRTLQSGGQDNLT
DLKLVIDDSRENVATLQECIMEPESLHLLGIQGGRVVQDQVTMLELKAMVSEMRELLHNQ
IKETNFLRNTIAECLACGLGGSPTNMDANKGAVPSPLRFVMQPQPLTQCPPGTCFRQNMC
IPTVSGGFQCAPCPDGFTGDGVNCDDVDECQFNPCFPGVRCVNTAPGFRCEKCPLGYVGA
EIDGVGVSYAKSHKQVCEDVDECLGPPLNGGCTANSHCYNTVGSFRCGDCKTGFTGDQIR
GCHGSRLCPNGQPSPCDIHGECIVERDGSISCVCGVGWAGNGYVCGQDTDIDAYPDNKLL
CTDNSCKKDNCLYIPNSGQEDADRDGMGDACDHDADSDGIINEDDNCWLVPNVDQKNTDK
DVHGDACDNCKHVENPSQKDTDKDGLGDECDDDIDGDGLKNILDNCQKVPNPDQRDKDND
GVGDACDSCPDVANPNQSDSDDDLIGDTCDDNIDSDGDGHQNTKDNCPDVINSSQLDTDK
DGMGDECDDDDDNDGIPDTEDNCRLVANRDQKDSDMDKVGDACQGDFDKDNVIDRIDHCP
ENAEVTLTDFRAYQTVVLDPEGESQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFSGVD
FEGTFHVNTVTDDDYAGFIFGYQDSSSFYVVMWKQTEQTYWQASPFRAVAEPGIQLKVVK
SRTGPGEYMRNSLWHTGNTTDQVQLLWKDPRNVGWKDKVSYRWFLQHRPQVGYIRARFYE
GSELVADTGVIIDTSMRGGRLGVFCFSQENIIWSNLKYRCNDNIPEDYQDPSRAQA
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgagaggtatgtgtggcagagcggttgctctgtctctggtcctgcagcagctggtactc
actgtcactgctcagggtattgtgtatgacctgctggtgtctccggactgcctgccagat
ctgcttcaaggaagtctgaagaacaaagggcgagatgaagccttcctgctctcctctttc
aggctttttaataaagcccccacctctctcttcagtgtttacaaccctaaagacaacaac
aaatacctggatttaagtgtgcaagctaagctcaataaagtgactcttcgttaccagaag
actgatgggagatttggcaccaccagtttcaaccacccaaccctggcagacgggcaggtc
catcacgtgatgctgcacgccagaggtctacagcgcggccctcctcgcctcgacatgtat
gtcgactgcaggctggttcacactttaaatgatctgccagctgcgtttgggtcactccct
ccgggtcccaacaaggtggcgctgaggactctgcagtcaggtggacaggataatctaaca
gacttaaagctggttatagacgactccagagaaaatgtggccactctgcaggaatgcatt
atggaaccagagtctctgcatttgctgggcatacagggaggaagagtagtgcaagatcag
gtgaccatgctggagctgaaggccatggtgtctgaaatgagagagctgctccacaaccag
attaaagagacaaactttctgagaaataccattgcagagtgtctggcctgtggacttgga
ggcagtcctacaaacatggatgccaacaaaggcgcagttccaagtcctttgcggtttgtc
atgcagcctcagcccctgactcagtgcccgcctgggacttgcttcagacagaacatgtgc
atcccaacagtatcaggggggttccagtgtgcaccttgtcctgatggattcactggagat
ggagttaactgtgatgacgttgacgagtgccagtttaatccatgttttcctggcgtccgg
tgtgtgaacacggctcctggtttccgctgtgaaaaatgccctcttggatacgtaggagct
gaaatagatggagttggagtgtcttatgctaagtcacacaaacaggtgtgtgaggatgtc
gatgagtgccttggtccacctctgaatggaggctgcacggccaactcccactgctacaac
actgtaggctccttccgctgtggagactgtaagactggcttcacaggtgaccagataaga
ggctgccatggttccaggctttgcccgaatggccagcccagtccttgtgatatccatggg
gagtgcattgtggaaagagatggcagcattagctgtgtgtgtggagttggttgggctggc
aatggctatgtgtgtggccaggacacagatattgatgcttatcctgacaacaagctcctg
tgcaccgacaacagttgtaagaaggacaactgtctgtacatccccaactctgggcaggag
gacgcagatagggacgggatgggtgatgcctgtgatcatgatgcagacagtgatggcatt
atcaatgaagatgataactgctggctggttcctaacgtggaccagaagaacacggataaa
gatgtccatggcgatgcctgcgacaactgcaaacatgtggaaaatccatcacagaaagat
actgacaaagatggtcttggagatgaatgtgatgatgacatagatggggatggcttaaaa
aacattcttgacaactgccaaaaagttcccaacccagaccagagggacaaagacaacgac
ggtgttggggatgcctgtgacagttgccctgatgtggccaaccccaaccagtcggactca
gatgatgatcttataggagacacatgcgatgacaacatagacagcgatggcgatggccac
caaaacacaaaagacaactgtcccgacgtcatcaactcctctcagctggacactgacaag
gatggaatgggagatgaatgtgacgatgatgacgataacgatggcatcccagacactgag
gacaactgcagactggttgcaaaccgtgaccaaaaagactcagacatggacaaagttgga
gatgcctgccaaggagactttgacaaagacaacgtgattgacaggattgaccactgccct
gaaaatgccgaggtcacactgactgacttcagagcatatcagaccgtggtgctcgacccg
gaaggggagtcacaaatcgaccctaattgggtggtacttaaccagggcatggagattgtc
cagaccatgaactctgacccgggcctggctgtaggttacacagcattcagcggtgttgac
tttgaaggaacattccatgtaaacacagttacggatgatgactatgctggcttcattttc
ggctaccaagactcctcctccttctacgttgtaatgtggaaacagacagaacagacttac
tggcaggcttcacccttcagggctgtcgctgagccaggaatacagctcaaggtggtgaag
tctagaacaggtcctggggagtatatgaggaactcgctctggcacacaggaaacacaaca
gaccaagtgcaacttctatggaaagaccccaggaatgttggatggaaggacaaagtttcc
taccgctggttccttcagcacagaccccaggttggatacataagggctcggttttatgag
ggctccgagctggtggcggacacgggggtgatcattgacaccagcatgagaggtgggcgg
ctgggtgtgttctgcttctctcaggaaaatatcatctggtccaacttaaagtaccgctgc
aacgataatattccagaggattaccaggatccatccagagcacaggcctaa
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