Oryzias latipes (Japanese medaka): 101162746
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Entry
101162746 CDS
T02443
Symbol
fxr1
Name
(RefSeq) fragile X mental retardation syndrome-related protein 1 isoform X1
KO
K15516
fragile X mental retardation protein
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101162746 (fxr1)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101162746 (fxr1)
Factors involved in mRNA localization
Other mRNA localization factors
101162746 (fxr1)
mRNA cycle factors
Stress granule specific factors
101162746 (fxr1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FXMRP1_C_core
FXR_C1
KH_9
Tudor_FRX1
KH_1
Agenet
FXR_C3
KH_2
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
101162746
NCBI-ProteinID:
XP_011472492
LinkDB
All DBs
Position
4:complement(18745896..18757533)
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AA seq
682 aa
AA seq
DB search
MEELAVEVRGSRGAYYKGFVRDIHDDSLTIAFENNWQPERQVPFEDVRLPPPADTKKEIR
EGEEVEILSRANELEPCGWWLGKVRMMKGDFYVIEYAACDATYNEIVTFERLRPVNTNKP
LSKNPFYKCTVPVPQDLQEACQAENAHKDFKKAVGACRISYCPETSHLVIVSTNEATVKR
VSLLSDMHLRSLRTKLLLMSRNQEATKHLETSRQLVSSFQEEFTVRLDLMGLAIGSHGSN
IQQARKTAGVTAIELDEETGTFRIYGETAEAVKKARGFLEFLEDSVQVPRNLVGKVIGKN
GKVIQEIVDKSGVVRVKIEGDNDNKQPRQEVLQGMVPFTFVGTKESISNVQVLLEYHISY
LNEVEQLRLERMQIDEQLRQITQGHRPVDRERGERGGGINADSSANASSSSSHGSRSYNG
RGRGRRGYSTGYGTNSEQSNASETESERKDELSDWSLAGEDQERERERGPRPLRDGRRRP
GPGRGRGGTGGRGRGGRGGYSNNSGSWDRDNTYSHGALETNTETDHTADTDASESLLPAN
RRRRSRRRRTDEDATMMDGMSESDNASVGENGIDDSEAKPQRRNRSRRRRNRLPEDRHPV
TVADFISRSESQSRQTTKDTKKSKALNRVDVITEHSSSAPPEDAHSISDDTGTNAANSST
ENPPEASEKEGSNPQPAVNGVS
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggaagaactggcggtggaggtccgtggctctcgcggcgcttattacaagggctttgtc
agagacatccacgatgattctctcaccattgcctttgagaacaattggcagccagaacgc
caggtgccctttgaggatgtcagactgccaccacctgctgacaccaagaaggaaattaga
gagggtgaagaggtggagattttatccagagccaatgagctggagccttgcggctggtgg
ttagggaaagttcgtatgatgaagggtgatttctatgtgatcgagtatgcagcctgtgat
gccacctacaatgagattgtaacctttgagcgtctgcggcctgtcaacaccaacaagccc
ctctccaaaaaccccttttacaagtgcactgttcctgttcctcaggatctacaagaagcg
tgccaggctgagaatgcacacaaggactttaagaaagctgtgggagcttgtcgcatttca
tactgtcctgaaaccagtcatctagtgattgtgtcgaccaacgaggcaacagtgaagcgg
gtgtctttgctgagtgacatgcacctgcgcagccttagaaccaagctgcttctgatgtca
cgtaaccaggaggccacaaaacacctggagacttcgaggcagctggtgtcctccttccag
gaggagttcacggtgagactcgacctgatgggcctcgccatcggcagccacggcagcaac
atccaacaagcacggaaaactgcgggtgtcactgccatcgagctggatgaggagacgggc
actttccgcatttacggggagacagcagaggctgtaaagaaagcaagaggcttcttggag
tttttggaggattctgtgcaagtaccgaggaaccttgtgggtaaagtgattggtaagaat
gggaaggtcatccaggagattgtggacaagtctggagtggtacgggtcaagatagaaggc
gacaacgacaacaagcagccacgacaggaagttttacagggaatggtcccatttaccttt
gttggtactaaggagagcattagcaacgttcaggtcctgttggaataccacatttcctat
ttgaatgaggtggagcagcttcgtctggagaggatgcagatcgacgaacagctgcgacag
atcacccagggtcaccgaccagtcgatcgggagaggggggaaagagggggcggaattaat
gcagacagcagtgccaacgcgtcctcgtcttcttcgcatggcagccgctcttacaatggc
agaggccgcggacgaagaggctacagcactggatatggcaccaattcggagcagtccaac
gcctcagagactgagtcagagcgtaaggatgagctcagtgattggtccctggctggagag
gaccaggagagagaaagggagagaggtcctcggccactaagagacggtcgcaggagacca
ggacctggcagaggtcgaggaggaacaggaggaaggggccgtggaggaagaggaggatac
agcaacaattctgggtcctgggatcgggacaacacctactcccacggagctttagagacg
aacacagagacagaccacacagctgacaccgatgccagcgagtccttgttgcctgcaaac
cgccgcagacggtctcggcggcgcagaacagacgaggatgccactatgatggacggcatg
agtgaatctgacaatgcttcagttggggaaaacggaatagatgactcagaagctaaaccg
cagcggcgcaatcgtagccggcgtcgccgtaaccgcctgcctgaggaccggcacccagtg
acggttgctgacttcatatctcgatctgagtctcagagcagacagaccaccaaggacacc
aagaaaagcaaagctttgaaccgggtggatgtcatcactgagcacagctcttcggctcca
cccgaagacgcacacagtatttctgacgacaccggcaccaacgctgcaaattcttccacc
gagaacccccccgaagcctctgaaaaggagggctcgaacccacaacctgctgtcaacgga
gtctcttag
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integrated database retrieval system
