KEGG   Oryzias latipes (Japanese medaka): 101162785
Entry
101162785         CDS       T02443                                 
Symbol
wdr48
Name
(RefSeq) WD repeat-containing protein 48 isoform X1
  KO
K15361  WD repeat-containing protein 48
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:ola00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    101162785 (wdr48)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ola03400]
    101162785 (wdr48)
DNA repair and recombination proteins [BR:ola03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     101162785 (wdr48)
SSDB
Motif
Pfam: WD40_Prp19 DUF3337 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 EIF3I Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_DCAF12 ANAPC4_WD40 WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_DCAF4 WD_LRWD1 Beta-prop_Vps41 WD40_RFWD3 Beta-prop_IP5PC_F WDR54 Beta-prop_NUP159_NUP214 RAWUL WD40_like Tfb2_C
Other DBs
NCBI-GeneID: 101162785
NCBI-ProteinID: XP_004079073
UniProt: A0A3P9ITU4 H2M882
LinkDB
Position
17:17405759..17413995
AA seq 677 aa
MATHHRQNAAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVY
QHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYV
KALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQMG
TVIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKSLLLNRDGTQCLSGSSDGTIRLWSLG
QQRCIATYRVHDEGVWALQVNEAFTHVYSGGRDKKIYCTDLRNPDIRVLICEEKAPVLKM
ELDRSADPPPAIWVSTTKSSVNKWSLKGIHNFRSSGEYDNDCTTPLTPLCTQPEQVIKGG
ASIIQCHILNDKRHILTKDTNNNVAFWDVLKACKGEDLGKVEFDEEIKKRFKMVYVPNWF
SVDLKTGMLTITLDESDCFAAWVSAKDAGFSSSDGSDPKLNLGGLLLQALLEFWPRTRIN
PMDEEENEVNHVNGEQENRVQKGNGYFQVPPHTPVIFGEAGGRTLFRLLCRDSGGETESM
LLNETVPQWVIDITVDKNMPKFNKIPFYLQPHSSSGAKTLKKDRLSASDMLQVRKVMEHV
YEKIINLDNESQTTSSSANDKPGEQEKEEDMAMLAEEKIELMCQDQVLDPNMDLRTVKHF
IWKSGGDLTLHYRQKST
NT seq 2034 nt   +upstreamnt  +downstreamnt
atggccacacatcacaggcaaaatgccgctgggcggaggaaagtacaggtgtcttacgtt
attagggacgaggtggagaagtacaatcgaaacggggtgaatgcactccagctagatcct
gcactcaaccggctcttcactgctgggagggactcaatcatccggatatggagtgtctat
cagcacaaacaggacccatacattgcatcaatggagcatcatacagattgggtaaacgat
atagtcctttgctgcaatgggaaaacattgatatctgcctcttcagatacaacggtgaaa
gtatggaacgcgcataaaggattttgcatgtcaacgttacgaacgcacaaggactatgtt
aaagctttggcgtacgccaaagacaaagagcttgtagcatcggccggtctggatcggcag
atctttctttgggacgtaaacacgctaactgccctcactgcttcgaataacacagtcact
acgtcatcgctgagcgggaacaaggactcaatctacagtctggcaatgaaccagatgggc
acagttattgtttctggatccactgaaaaggttctgagagtgtgggatcctcggacatgt
gcaaaactcatgaagctaaaaggtcacacggacaacgtcaagtccttgctgctgaaccga
gacggcacgcagtgtctgtccggcagctcggatgggaccatccgcctctggtctctgggc
cagcagaggtgtatcgccacgtaccgagtgcacgacgaaggcgtgtgggccctgcaggtc
aacgaggcctttacgcatgtctattcaggaggcagagacaagaagatctactgtacggac
ctgcggaacccagacatccgtgtgctcatctgcgaggagaaggccccagtgctcaaaatg
gaattggacagatctgctgacccacctccagcaatctgggtttccaccaccaagtcatcc
gttaataaatggtctttaaagggaatccacaacttcagatcatcaggggaatacgacaat
gactgcaccactcccctgacgccattgtgtactcagccagaacaagttattaaaggaggt
gccagtattattcagtgccacattctgaatgacaagagacacatactcacgaaggacact
aacaacaatgtggcgttttgggacgtcctgaaggcttgcaaaggagaagatctggggaaa
gtggaatttgacgaggagattaaaaagcgcttcaagatggtctacgtgccaaactggttc
tcagttgatctgaaaacagggatgctcactatcactttggatgaaagtgactgttttgct
gcctgggtgtctgcaaaagatgctggcttttcaagttctgatgggtccgatccaaagttg
aacctgggaggccttttgcttcaggctctgttggagttctggcccaggactcggattaat
cccatggacgaggaggagaacgaggtgaaccacgtcaatggggagcaggagaacagggtc
caaaaaggcaacggttatttccaggttcctccacacaccccagtgatctttggagaagct
ggaggaagaactctttttaggttgttgtgtagagactcaggtggagaaacagaatccatg
ctgttgaatgagacagtcccacagtgggtgatcgatataactgtagataaaaatatgccc
aaattcaacaaaatcccgttctacctccagcctcattcctcctcgggtgcaaaaactctc
aagaaggaccgcctctcagccagcgacatgctccaggtccggaaagtgatggagcacgtt
tacgagaagatcattaacctggacaacgagtcccagaccaccagctcctcggccaacgat
aagcctggcgagcaggagaaggaagaggacatggcgatgctggcggaggagaagatcgag
ctcatgtgtcaagaccaggttctagaccccaacatggatctgcgaacggtaaaacatttt
atctggaagagcggcggggacttgacgcttcactataggcagaagtccacgtga

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