Oryzias latipes (Japanese medaka): 101162912
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Entry
101162912 CDS
T02443
Symbol
copb1
Name
(RefSeq) coatomer subunit beta
KO
K17301
coatomer subunit beta
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ola04131
]
101162912 (copb1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ola04147
]
101162912 (copb1)
Membrane trafficking [BR:
ola04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
101162912 (copb1)
Exosome [BR:
ola04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
101162912 (copb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Adaptin_N
Coatamer_beta_C
Coatomer_b_Cpla
HEAT_2
HEAT
Cnd1
HEAT_EZ
MMS19_N
AP4E_app_platf
Motif
Other DBs
NCBI-GeneID:
101162912
NCBI-ProteinID:
XP_004067066
UniProt:
H2LR39
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All DBs
Position
3:19359567..19374938
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AA seq
953 aa
AA seq
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MTAAENVCYTLINVQSDSEPPSEVSLKADLEKGEIKAKTEALKKVIIMILNGEKLPGLLM
TIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGKLLQEMILVCDAYRKDLQHPNEFIRGST
LRFLCKLKESELLEPLMPAIRACLEHRHSYVRRNAVLAIYTIYRNFENLIPDAPELIHDF
LVNEKDASCKRNAFMMLIHADQDRALDYLSTCIDQVHTFGDILQLVIVELIYKVCHANPS
ERARFIRCIFNLLQSSSPAVKYEAAGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLI
VLDRLIELKDHPTHERVLQDLVMDILRVLSTPDLEVRKKTLQLALDLVSSRNVEELVIVL
KKEVIKTNNVSEHEDTDKYRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDTNEAAAADV
LEFVREAIQRFDNLRPLIIEKMLEVFHAIKTVKIYRGALWILGEYCSTKEDIQSVMTEVR
RSLGEIPIVDNEIKKETGELKPEDEVSAAPAQKLVTEMGTYVTQSALSSSRPSKKEEDRP
PLRGFLMDGDFYVAASLATTLTKVALRYVLIVEDKKKQNSFVAEAMLIMVTVLHLGKSSL
PKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRKSLSHMLAVRLEEEKLSQKKESEK
RNVTVQADDPISFMQLTAKNEMCSKEDQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLT
GFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPH
DFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPASCTDAEF
RQMWAEFEWENKVTVNTNIVDLNEYLQHILKSTNMKCLTPEKALSGFCGFMAANLYARSI
FGEDALANVSIEKPIHLGPEAPVTGHIRIRAKSQGMALSLGDKINLSQKKANL
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgacggctgcagaaaacgtttgttacactctcatcaatgttcagtcggattccgagccc
ccgtccgaagtcagcctcaaagctgatctagagaagggagagatcaaagcgaagacggag
gccctgaagaaggtcatcatcatgatcctgaatggggagaagttgccaggcctgcttatg
accataattcgctttgtgctgccacttcaagaccacaccatcaagaagctgctcctggtt
ttctgggagatcgtccctaaaacgactccagatggaaagctgcttcaggagatgatcctg
gtctgtgatgcctacagaaaggatcttcaacatcccaacgagttcatccgtggttccact
ctgcgtttcctgtgcaaactgaaggagtcggagttgctggaacctctcatgcctgccatc
cgcgcctgcttggagcaccgccacagctatgtgcgccgcaacgccgtcctggctatttac
accatctacaggaactttgagaatctgattccggacgctccagagctgatccacgatttc
ctcgtcaatgagaaagacgccagctgtaagagaaacgctttcatgatgctgattcatgca
gatcaagatcgagctctggattacctcagcacatgcattgaccaagtgcacacttttggg
gacatcctgcagctggtcatcgtggagctgatttataaggtttgccacgctaacccttct
gagcgagcgcggttcatccgctgcatcttcaacctcttgcagtcctcaagtccagctgtg
aagtacgaagctgcaggcactcttgttaccctctccagtgctcctacagctatcaaggct
gctgcccaatgttatattgacttgatcattaaagagagtgacaacaacgtgaagctgatt
gttcttgatcgtctgattgaactgaaggatcatcccactcatgaacgggttctccaggac
cttgtaatggacatcctccgtgtcctcagcactcctgacctggaagtcagaaagaagacc
ttgcagctggcgctggacctcgtctcttctcgtaacgtggaggagttggtgatcgttttg
aaaaaagaagtgatcaagacaaacaatgtctcagagcacgaagacactgacaagtacagg
cagctcctggtgcgcactctccactcgtgcagtgtgcgcttccccgatatggcggccaac
gtcatacctgtgctgatggagttcctgagcgacactaacgaggcggcggctgctgacgtg
ctggaattcgtgcgagaggcgattcagaggttcgacaacttgagacctctgatcatcgaa
aagatgctggaagtgtttcacgccatcaaaacggtcaagatttacagaggagcactttgg
atattaggggaatactgcagcaccaaagaagacattcagagtgtgatgacagaagtacgc
aggtctttaggagagatccctattgttgacaacgagataaagaaggagactggtgaactg
aagccagaggatgaagtgagtgcagctccagctcagaagctggtgacagagatgggcacc
tatgtgacccagagtgctctcagctcctctagaccctcaaaaaaagaggaagacagacct
ccactcagaggcttcctgatggatggagacttctatgtagcagcttccttagccaccaca
ctaaccaaagtggccttgcgctacgttttaattgttgaagacaagaagaaacaaaactcg
tttgttgcggaggccatgctgatcatggtcacggtgctgcatctgggcaagtcgtccctg
cccaagaagccaatcacagacgacgatgtggaccgcatctcgctttgcctgaaggttctg
tcagagtgttcgccgctcatgaatgacattttcaacaaggagtgccgcaaatccctgtca
cacatgctggctgtcagattggaggaagagaagctgtcacagaagaaagagtcagagaaa
cggaatgtgacggttcaggcagacgatccaatctccttcatgcagctcacagccaaaaat
gagatgtgctccaaggaggatcagtttcagctcagcctgctggctgctatggggaacact
cagagaaaagaagctgctgaccctctggcatcaaaactcaacaaggtgacccagctgacc
ggcttctctgacccagtgtatgctgaagcttatgtccatgtcaaccagtatgacattgtt
ctggatgtgctggtggtcaaccagactagtgatactcttcagaactgcaccctggaactg
gccactttaggggatctcaagttggtggaaaaaccttcacctttaactctggctcctcac
gattttgcaaacatcaaggctaatgtcaaagtggcctctacagagaacggcatcattttt
ggcaacattgtctatgacgtatctggagctgccagcgacagaaactgtgtggttctcagc
gacatccacatcgacatcatggactacatccagccggcatcctgcaccgatgcagagttc
agacagatgtgggcagagtttgagtgggaaaacaaggtgaccgtgaacaccaacattgtt
gatctgaacgagtacctccagcacatcctcaagtccacaaacatgaagtgtttgacccct
gaaaaggcgctctctggcttctgcggcttcatggctgctaacctttatgctcgctccatc
tttggagaagatgctctggctaacgtcagcatcgagaagcccatccacctcgggccggag
gcgccggtcaccggacacattcgcatccgagccaaaagtcaggggatggctctgagcctg
ggtgacaagatcaatctctctcaaaagaaggcaaacctctaa
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