Oryzias latipes (Japanese medaka): 101163065
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Entry
101163065 CDS
T02443
Symbol
atg16l2
Name
(RefSeq) autophagy-related protein 16-2 isoform X1
KO
K20868
autophagy-related protein 16-2
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
101163065 (atg16l2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ola04131
]
101163065 (atg16l2)
03029 Mitochondrial biogenesis [BR:
ola03029
]
101163065 (atg16l2)
Membrane trafficking [BR:
ola04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
101163065 (atg16l2)
Others
Rab GTPases of specific organelles
Auto phagosome
101163065 (atg16l2)
Mitochondrial biogenesis [BR:
ola03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
101163065 (atg16l2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ATG16
NBCH_WD40
Cytochrom_D1
Uso1_p115_C
Motif
Other DBs
NCBI-GeneID:
101163065
NCBI-ProteinID:
XP_023817782
LinkDB
All DBs
Position
13:176841..185620
Genome browser
AA seq
665 aa
AA seq
DB search
MDPVAEPLRGGGVPVPGGGPPVPGGGPPVPGGARRIAEPWRRHVIRQLRHRDRTQSSMFQ
DLIRLYTQILEKTSLTKGMLSGPARRPSADTSLSFLQQQNIRFQKITGELAYQVVELQQQ
IRIKDGILETQRARLEDEQLQLQAGRGARQELQGRVEQVQQENGALKVEYDALLERRREA
ESRLREEKRREEQLLEDILVQKNQAAARMNSLKERCCSIITAPPLKRLHLHGSPEHPCSD
PLTDLMVHPGPKQNLSIFIFVFISASEAPETPLQAAARSKVTVGGNTDLRVSEDQVKKNP
PSLEAFPKPEGQDESGGRKQARLFRSASTSRIFHSFRGFFQKRRGLSVCSLEEDFPRPVR
ICMYARVPARALQVLEAHEQGINAVRFSCSSDLLATGGTDRVVKLWELRAGTLTHRATLD
GSTEGVTCVEFDHTGRRVLAASFDRSALLWRLGDSNPKVTLTGHSRKVTAARFTSAPHQV
VTGSADRTIRLWDLQRAACVQQVETPSSCSDLVCSGNCIISGHFDSKIRVWDGRLGGCVQ
ELPSQGRVTSLDLSYDHRQVLSCCRDDSLQLVDLRRWSRDRVVFRAEGFKCGSDSTKAVI
SPDSSYVAAGSADGSVYVWRVSTANLETRLLEEHRSPVNAVSWSLSGEYVVSVDKSRRAV
LWSDF
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggatcccgtggcggagccgctgcggggcggtggagtcccggttccgggcggcggaccc
ccggttccgggcggaggacccccggttccgggcggcgcccgcaggatcgcggagccgtgg
cgaaggcacgtcatccggcagctgaggcacagagaccggacccagagctccatgttccag
gacctgatccgcttgtacactcagattctggagaaaaccagcctgaccaaaggaatgctg
agcggccccgccaggcgtccctctgcagacacctcgctgtccttcctgcagcagcagaac
atcaggttccagaagataactggagagctggcctatcaggtggtggagctgcagcagcag
attaggatcaaggatggaattctggaaacacagcgtgccaggctggaggacgagcagctg
cagctgcaggccggcagaggagcccggcaggagctgcagggccgggtggagcaggtccag
caggagaacggggcgctgaaggtggagtacgacgccctgctggaaagacggagggaggcg
gagtccaggctcagggaggagaaaaggagggaggagcagctgctggaggacatcctggtc
cagaagaaccaagctgctgcccgcatgaacagcctgaaagaacgctgctgcagcatcatc
actgctcctcctctcaagcgtctccatctgcatggatctccagaacatccatgttctgat
cctctgacggacctgatggtccatcctggtcccaaacagaacctcagcatcttcatcttc
gtcttcatctctgcctcagaagctccagaaacgccgctgcaggccgctgccaggtcaaag
gtcaccgtcggtggaaacactgacctgagggtttcagaagaccaagtaaagaagaacccc
ccctccttagaggcctttccaaaacctgaaggtcaggatgagtccggcgggcggaaacag
gctcgtctgttcaggtcggcctccacttccaggatcttccactccttcagaggcttcttt
cagaagaggcgtggcctctccgtctgtagtttagaggaggacttcccccgtcctgtaagg
atctgcatgtacgccagggttcctgcccgagcgctgcaagttctggaggcccacgagcaa
ggcatcaatgcagtgcggttcagctgcagctcggacctgctggccaccggcgggacggac
cgggtcgtcaagctgtgggagctgcgagcaggcacgctgacgcacagagcgactctggat
gggagcacagagggcgtcacctgcgtggagtttgatcacacgggtcgccgggtcctggca
gcctctttcgatcggtcggccttgttgtggcgcctcggcgactccaatcctaaggtgact
ctgacaggtcacagcaggaaggtgacggcggccaggttcacctcagcgccccatcaggtg
gtgacgggaagcgccgaccggaccatccgactgtgggacctgcagagagcggcctgtgtg
cagcaggtggagacgccgtcttcctgcagcgacctggtctgctccgggaactgcatcatc
agcggacacttcgactccaagatcagagtctgggacggcaggttggggggctgtgttcag
gagctgccgtctcagggcagagtcacctctctggacctgagttacgaccatagacaagtg
ctcagctgttgccgtgacgacagcctgcagctggtggacctgaggaggtggagccgcgac
cgcgtggtcttcagagcggagggcttcaaatgtggcagcgacagcacaaaagcggtgatc
agcccggacagcagctatgtggcggccgggtcagcagacggcagcgtgtacgtttggaga
gtctccaccgcaaacctggagacccgcctcctcgaggagcaccgctcgcccgtcaacgcc
gtgtcctggtctctgtccggagagtacgtggtcagcgtggacaagagccggagggccgtc
ctctggagcgacttctga
DBGET
integrated database retrieval system
