Oryzias latipes (Japanese medaka): 101163131
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Entry
101163131 CDS
T02443
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03008
Ribosome biogenesis in eukaryotes
ola03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
101163131 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
101163131 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ola03021
]
101163131 (xrn2)
03019 Messenger RNA biogenesis [BR:
ola03019
]
101163131 (xrn2)
03009 Ribosome biogenesis [BR:
ola03009
]
101163131 (xrn2)
03016 Transfer RNA biogenesis [BR:
ola03016
]
101163131 (xrn2)
Transcription machinery [BR:
ola03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101163131 (xrn2)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
101163131 (xrn2)
Ribosome biogenesis [BR:
ola03009
]
Eukaryotic type
Pre-60S particles
RNases
101163131 (xrn2)
Transfer RNA biogenesis [BR:
ola03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
101163131 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
DJC28_CD
zf-CCHC_4
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
101163131
NCBI-ProteinID:
XP_004083793
UniProt:
H2MS13
LinkDB
All DBs
Position
24:complement(16197657..16224588)
Genome browser
AA seq
972 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVHCVEEKGKECNGVRIPVDTTKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELVDEKQRMREEIIQRGGYLPPEEIKERFDSNCITPGTEFMDNLAHCLRYYVAE
RLSNDPGWKNVVVFLSDASVPGEGEHKIMDFIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCSLCGQTGHEMKDCQGVAREKQGQHDEFADTMPVSEQE
FIFIRLCVLREYLERELTMASLPFPFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKDVVHKTGGYLTQNGYVNLERVEMIMQAVGVAEDNIFKKRKEDEENFRRRNKE
KRKRMKVEQQGPAYLTTGQFAPQALGRRDVPEPIQNARHQAYDMRMNPREQNNKNAAQSL
KAMLRNEGSSSSGANESQDRRAPKRKAEDSDSDPEPEDNVRLWEDGWKQRYYKNKFDVDV
TDSDFRKKVVQSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKEMFTEFEKDT
MPFKPLEQLMSVFPAASGNFLPPTWRNLMVSPESSIIDFYPDDFAIDLNGKKYAWQGVAL
LPFVDERRLRAALAEVYPDLTPEEARRNSLGSDVLFVGKSHPLYDFIHELYRDECNKGTV
VPPELCFGIQGLLNLDNNPVLPDKPVKSPIPTLRDISQSTAVSVKFKDPEFAVGYVFKAV
LLPGAKIPTKVLKPGDWERGNRGPWRPQLGFNPNRQQAHLDQSGFRALGHSLNRNQQGGG
QYSNTPPPGTYHQGSYRPQHAGGHRGFQHSRPNPQLGASQPYQQPQFSRHQQQPPQYSGG
GHGWNRVVQSQPSAYQQNANRDRGGPRHAGYQQPHDHWQDRQDDRRGNRGQPQQGYGSSR
SYPPPPPSRRWN
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccagcattttttcgttggctaagccgaaagtacccgtctataattgtgcat
tgtgttgaagagaaggggaaagagtgtaatggagttcgtattcctgtcgacaccacaaaa
ccaaaccccaacgaggtggaatttgacaacttgtacttggacatgaatgggatcattcat
ccttgcacacatcctgaagacaaacctgctcccaaaaatgaagatgaaatgatggtcgct
atctttgagtacatcgatcgcctgttcaatatagtgcgccccagaagagtcctatacatg
gcaatcgatggagtagctccacgtgccaaaatgaaccagcaacgctctcggcggtttcgc
gcctccaaagagggagttgagcttgtagacgagaagcagcgcatgagagaagagatcatt
cagagaggaggttatcttccacctgaagaaatcaaagagaggtttgacagcaactgcatc
actccaggaacagagttcatggacaacctggcccactgtcttcgatactatgtagctgaa
aggctcagcaatgatcctggatggaagaatgttgttgtcttcttgtctgatgccagcgtt
ccaggagaaggagaacacaagattatggattttatccggagacagagagctcaacctaat
catgacccaaacacgcatcactgcctttgtggagctgacgctgacctgatcatgttgggc
ttggccactcatgaaccaaactttactataatcagagaggagtttaaacccaacaaacca
cgcccctgctctctctgtggacagacgggtcatgagatgaaggactgtcaaggtgtggca
agagagaagcaaggacagcatgatgagtttgccgacacaatgccggtgtcagagcaggag
ttcatatttatcagattatgtgttctgagggagtatttggaaagagagcttaccatggcc
agtctgccatttccctttgactttgagcgcagtgttgacgactgggtcttcatgtgtttc
tttgttgggaacgacttcttaccacatctgccatccttagaaatcagagagggagcaata
gatcgtctggtcaacatttacaaagatgttgttcacaaaactggaggctacttaacccaa
aatggctatgtcaacttggagcgagtcgagatgatcatgcaggctgtgggcgtggctgag
gacaacatctttaagaaacgcaaagaggatgaggagaacttcagaaggagaaacaaagaa
aaacgaaaaaggatgaaagtggagcagcagggtcctgcttacctgaccactgggcagttt
gcccctcaagccttgggaagaagagatgttcctgaacccatccagaacgctcgacaccag
gcgtacgacatgaggatgaaccccagagagcaaaacaacaagaatgcagctcagtctctg
aaagccatgttgaggaacgagggcagttcgtcttctggtgccaatgaaagccaagatcgc
agagcacccaagaggaaagctgaggacagcgacagcgaccctgagcctgaagacaatgtc
aggttgtgggaggatggctggaagcagagatactacaagaacaagtttgatgtggatgtg
acagacagtgacttcaggaagaaggtggttcagtcgtatgtggagggcctctgctgggtg
ctgcgatattactatcagggctgtgcatcctggaagtggtacttcccattccactacgct
ccgtttgcctctgacttcaaagacatcaaagaaatgttcacggaatttgagaaggacacc
atgccgttcaaacctctggagcagctaatgagtgtgtttcctgctgccagtgggaacttc
ctgccaccaacgtggagaaacctcatggtcagcccggagtcttccatcattgatttttac
cctgacgattttgccattgacctcaatggtaaaaaatacgcttggcaaggtgttgctttg
ctgccttttgtggatgaacggcgtttgagagctgctctggcagaagtctaccctgacctc
acgcctgaggaagcgaggagaaacagtctgggcagcgatgtgttgtttgttggaaagagt
cacccgctgtatgacttcatccatgaactctaccgggatgaatgtaacaagggcacagtg
gttccaccagagctgtgctttggaatccaagggttattaaatcttgataacaaccctgtt
ctaccagacaagccagtgaagtcccctatccctacattgcgggacatttcacaaagtact
gcagtcagtgtgaagttcaaggaccctgaatttgcagttggatatgtgttcaaagcagtt
ctactccctggagccaagattcccactaaagtcttgaagccaggagactgggaaaggggg
aacaggggaccatggagaccccagctgggattcaaccccaacagacaacaggctcacctg
gaccagtctggcttcagagctcttggtcacagtctgaacaggaaccaacaaggtggagga
cagtacagcaacactccacccccaggcacctaccaccaaggaagctaccgtccacagcac
gccggtggccaccgtggatttcaacattccagaccaaatcctcagttgggagcatcacaa
ccttaccaacagccgcagttttcaaggcatcaacaacagccgccgcagtactcgggcggc
ggacacggatggaatcgggtcgtgcagtcccagccgtcggcgtaccagcagaacgccaac
cgcgatcggggagggccgaggcatgccggctaccagcagccccacgatcactggcaagac
cgccaggacgatcgaaggggcaaccgagggcaaccgcaacaggggtacggctccagcaga
agctatcctcctcctccaccatccagacgctggaactga
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