Oryzias latipes (Japanese medaka): 101163308
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Entry
101163308 CDS
T02443
Name
(RefSeq) ATP-binding cassette sub-family A member 1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola02010
ABC transporters
ola04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
101163308
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
101163308
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ola02000
]
101163308
Transporters [BR:
ola02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
101163308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
Motif
Other DBs
NCBI-GeneID:
101163308
NCBI-ProteinID:
XP_011471453
UniProt:
H2N1U3
LinkDB
All DBs
Position
10:complement(3215166..3268989)
Genome browser
AA seq
2295 aa
AA seq
DB search
MSIITQLGLLLWKNFTYRRRQKLQLLVEIVWPLFIFFILIAVRLNYPPYEQHECHFPNKA
MPSAGTLPWIQGILCNANNPCFRNPTPGESPGIVGNFNDSIISRLFSDAKKILLYSQNDK
NLEGFKELARTLQALQSSRSGFQLKHFLQDNETLSRFLLANASFPEKSIQQIREAHINLE
KVIVEGFNVHLKDMCPTKGGRQNLTDYVRISDPEVAARVQQVICEAPAAWLDLAEEHFMS
NLDFFRPVRRDVHSDPEAVQRVAAAANNLLDSLASLAVELAGMKSWIDLRNEIIFLTQNA
TSSPSAMYQAVSRIVCGHPEGGGLQIKSLNWYEDSNYKALFGNHNSSEDESTLYDNSSTP
FCNSLVSNMDSSPMAHMIWQALKPLLLGKILYTPHTPATQKIIHEVNRTFQELGVFRDLG
GMWEEMRPKVWDFMESSQEMNMIRTMLKNNITASFLTSKLASTDWTVDTLSTFLSNQVDN
SHLPESIVTWRKVFNETDQAIMSISRFMECVNLDKLEPVSNEELMINRSMKLLEDRKFWA
GIVFPDIAPNATALPPKVNYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDMRYIWGGFT
YLQDVIEQGIIRALTGTKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVSI
ILKSVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLISAGLLVLLLKKGNLLPYSD
PGVIFLFLGSFAVVTIMQCFLISTAFARANLAAACGGIIYFTLYLPYVLCVAWQDYIGYG
AKVMASLLSPVAFGFGCEYFALFEEQGVGIQWSNLLSSPLQEDDFSLRTTILVMYFDSFL
YGVLTWYIEAVFPGQYGIPRPWYFPFTKSYWFGDKDENSSKIPLNRRRNQTAVCVEEEPA
HLEPGVYIENLVKVYRQGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPT
SGTAYILGKDIRTDLNAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLPEEQVKGEIE
HILQDTGLQHKRRSRTSTLSGGMQRKLSVALAFVGGAKVVILDEPTAGVDPYARRGIWDL
LLKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLKNQLGSGYYLTLVKKD
PETSLSSCRNSSSTISFNKKDEENTSVSSSDAGLGSEHESEAATIENGPAASICTVPFVP
TDTSLVSALILRHVPTARLVEDLGHELTYILPYSAAKNGAFVELFKDLDLKLHELGISSY
GVSDTTLEEIFLKVAEDNGVDTEVLSDGTLPVRARRRTHAFGGGEHQSCLKPISEDDTYD
CNDSEGDPDCRETDWLSCTEGKGSYQVNGWSLRRQQFVALMWKRFLYARRSRKGFFAQIV
LPAVFVCIALVFSLIVPPFGKYPSLELQPWMYEDQVTFISDDAPGDANMQKLLKSLMEPP
GFGTRCMDGYSIPESPCTMGDEDWHNPDVPESLQQLFSSGNWTMENPSPSCFCASDGKKR
MLPDCPVGAGGLPPPEMKLSATDTLQNLTGRNISDYLVKTYAQIIGKSLNNKVWVNEFRY
GGFSLGARSTQVLPPANEIDDAIERVRNIFELQKGAAADRFLDSLSNFINGLDTKNNVKV
WFNNKGWHSVPAFMNVMNNAILRANLPPGADPSNYGIMSFNHPLNLTKEQLSQVALVTTS
VDVLVSICVIFAMSFVPASFVVFLIQERVNKAKHMQFISGVQPLLYWTANFLWDMCNYFV
PAALVILIFVCFQQKAYVSSANLPVLALLLLLYGWSITPLMYPASFFFTIPSTAYVVLTS
VNILIGINGSISTFVMELFGDHEIGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMADAL
ERFGENRFRSPLEWDMVGKNLFAMAVEGVVFFIITLLIQYKFCIKPRPISKLTKMGSLGE
EDEDVARERQRIVQGLGQGDILELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGA
GKTTTFKMLTGDTMVTSGEAFLAGKSILREIDEVHQNMGYCPQFDAINELLTGREHLELY
AVLRGVPGNEVCDVAEWGIRKLSLLKYADKRAGSYSGGNMRKLSTAISLIGAPPVVFLDE
PTTGMDPKARRALWNCIHSVIKQGRSIVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQH
LKNRFGDGYTIILRVAGPDPDLLPVMKFIESELSGSTLKEKHRNMLQYQLPSSLTSLAHI
FSILAKNKDTLRIEDYSVTQTTLDQVFVNFAKDQSDDYVTKDASVRRKDTIIEVPELGSA
HGAAEGGASQRESIM
NT seq
6888 nt
NT seq
+upstream
nt +downstream
nt
atgtccatcatcacgcagctggggctgctgctgtggaagaacttcacctacagacggcgg
cagaagctccagctcctggtggaaattgtctggccgctcttcatcttcttcatcctcatc
gcagtgcgcctgaactaccctccctacgagcagcatgagtgccattttccaaacaaagcc
atgccgtctgccggaacactaccatggatccaggggattctgtgcaatgcgaacaacccg
tgcttcaggaacccgacccctggcgagtcgccgggcatcgtgggaaactttaacgactcc
ataatttctcgtctgttctccgacgccaagaagattcttctgtacagtcagaacgacaag
aacctggagggcttcaaggagctggcacgaacactgcaggcgctgcagagcagccgctca
ggctttcagctgaagcatttcctgcaagacaatgagactctgtcgagattcctgctagca
aacgcctccttccccgagaaaagcatccaacagatcagggaggcccacatcaacctggag
aaggtgattgtggaaggtttcaatgtccacctgaaggacatgtgtcccacaaaggggggc
cgccagaacctgaccgactatgtgaggatttcagacccagaagtggcagcacgggttcag
caggtcatctgtgaggcaccggcggcctggttggatctggctgaagagcacttcatgtcc
aatctggacttcttcagacccgtccggagggacgtccactccgaccccgaggccgttcag
cgggtagccgctgcagccaacaacctcctggacagtctggcttcgctcgcagtggagttg
gcaggaatgaagagctggattgatctgaggaatgagatcatcttcttgacccagaacgcc
acatcgtcgcccagcgccatgtaccaggccgtctccaggatcgtgtgcggtcaccctgaa
ggcggcggcctccagatcaaatccctcaactggtatgaagacagcaactacaaagctctg
tttggaaaccacaacagcagcgaggacgagtccacactctacgacaactcttcaactccg
ttctgtaacagcctggtgagcaacatggactccagtcccatggctcacatgatctggcag
gctctgaaacctctgctgctggggaagatcctgtacacccctcacacccccgccactcag
aagatcatccatgaggtgaaccggacgttccaggagcttggtgtgttcagggacctgggg
ggcatgtgggaggagatgagacccaaagtgtgggacttcatggagagcagccaggagatg
aacatgatcaggacgatgctgaagaacaacattactgctagttttcttaccagtaagctt
gcaagcaccgactggaccgtggacacattgtccaccttcctgtccaatcaagtggacaac
tcacacctgcctgaaagcatcgtcacctggaggaaagtcttcaacgagacagaccaggcc
atcatgagcatctcccgtttcatggagtgtgtgaatctggacaagctggagccggtgtcc
aacgaggagctaatgatcaaccgctccatgaagctcctggaggacaggaagttctgggcc
gggatcgtgttcccagacatcgcccccaacgccaccgcgctaccgcccaaagtcaactac
aagatccgcatggacatcgacaatgtggaacggaccaacaagatcaaagacgcgtactgg
gacccgggccctcgtgctgacccatttgaagatatgcgatacatctggggcggtttcaca
tacctgcaggatgtcattgagcaaggcatcatcagagcactgacgggcaccaaggagaag
actggcgtctacatccagcagatgccttacccgtgctacgtagacgacatcttcctgcga
gtgatgagccgctccatgccgctcttcatgacgctggcctggatgtactcggtgtccatc
attctgaagagtgtggtgtacgagaaggaggcccggctgaaggagaccatgaggatcatg
ggactggacaatggcatcctgtggttcagctggttcatcagcagcctgattcctctgctg
attagtgcaggactgctggtgttgctgctcaagaaggggaacctgctaccctacagtgac
ccaggagtcatcttcctcttcctggggtcgtttgctgtggtcaccatcatgcagtgtttc
ctcatcagcactgcgtttgcccgtgccaatctggctgcagcctgcggagggatcatctac
ttcaccctctacctaccctacgtgctctgcgtggcctggcaagactatattggctatgga
gccaaagtgatggccagcctcctgtcgcctgtagcgtttgggtttggctgtgagtacttt
gcgctgtttgaggagcagggggtcggtatccagtggagcaacctgctgtcgagtcctctt
caagaggatgacttcagcctccgtaccaccatcctcgtcatgtactttgactcctttcta
tacggggtcctcacctggtatatcgaggctgtgtttccaggtcagtatgggatccctcgg
ccgtggtacttccccttcacaaagtcttactggtttggagataaagatgaaaactccagc
aaaatccctttaaatcggagaagaaaccaaactgctgtttgtgtggaggaggagcctgct
cacctggaacctggggtctacatcgagaacctggtgaaggtataccgtcaaggtaagaag
ctagcggtggacggactgacgctgggattctacgagggacaaattacatccttcttggga
cacaatggagctggaaaaacgaccaccatgtccattctaaccggcttgttccctcccact
tctggcaccgcctacatcttgggaaaagacatccggacggatctaaatgccatcaggcag
agtctgggcgtctgtccgcagcacaacgtccttttcagcatgctgacagtggaagagcac
atttggttctacgccagactcaaaggtctgccggaggagcaggtgaaaggtgagatcgag
cacatcctccaggacacggggctgcagcacaaacgccggtccagaaccagcactctgtcc
gggggcatgcagaggaagctgtcggtggccctggcctttgtggggggagcaaaagtggtg
atcctggacgagcccaccgctggcgttgacccgtacgcccgcagaggcatctgggatttg
ctgcttaagtatcgacagggtcggaccatcatcctctccacacatcacatggacgaggcc
gacattttgggtgaccgcatcgccatcatctctcatgggaagctgtgctgcgtgggttcc
tctctctacctgaagaaccagctggggtcaggatattacctgacgctggtgaagaaggac
ccagaaacatcactgagctcctgcaggaactcctccagcaccatctccttcaacaagaag
gatgaagaaaacacctcggtgagcagcagcgacgcaggactcggcagcgaacatgaaagt
gaggcagcaaccatcgagaatggcccggcagcctccatctgcactgtcccctttgtgccc
accgacacgtctctggtgtcagccctgatcctgcgtcatgtcccgaccgctcgcctggtg
gaggacctggggcacgagctgacctacattctgccgtacagcgccgccaagaacggagcc
tttgtcgagctcttcaaggacctggacttgaaactgcacgagctcggcatctcgagctac
ggagtgtccgacaccacgctggaggagattttcctgaaagtggctgaagataatggagtg
gatactgaagttctctcagacggcacccttcccgtccgggcacggaggaggactcacgcc
tttgggggcggagaacatcagagctgcctgaaacccatatcagaagacgacacctatgac
tgcaatgactcagagggagaccctgactgcagggagacggactggctgagctgcacagag
ggcaaaggctcgtatcaggtaaatgggtggagcctaaggaggcagcagttcgtggctctg
atgtggaagcgcttcctgtacgcacggcgctccagaaaaggattctttgctcagatcgtt
ctcccggccgtgtttgtctgcatcgctctggtgttcagcctcattgtgccaccttttggg
aagtatcccagtctggagctgcagccatggatgtacgaggatcaggtcaccttcatcagc
gacgacgctcccggagacgccaacatgcagaagttactgaagtctctaatggagcctcca
ggttttgggacacgctgcatggacggatactccattccagagtctccctgcacgatgggt
gatgaagactggcacaacccagacgttcctgagagtctccagcagttgtttagttctgga
aactggaccatggagaacccgtccccaagctgcttctgcgcctctgatggcaagaagagg
atgctgccagactgtcccgtgggagcaggcggtctgcctccccctgagatgaagctgagc
gccacagacaccttacagaacctgactggaagaaacatctcagactacctggtgaaaact
tacgctcagatcatcgggaagagcctgaataacaaagtctgggtgaacgagttcaggtac
ggaggcttctcattgggtgccaggagtacacaggtgctcccaccagctaacgagatcgat
gacgccatcgagagagtccgaaatatcttcgagctacagaagggtgctgctgcagatcga
ttccttgacagcctgtccaacttcatcaatggtctggacacaaagaacaacgttaaggtc
tggttcaacaacaagggctggcacagcgtcccggccttcatgaacgtgatgaacaacgcc
atcctgagagctaacctgcctcctggtgcagaccccagcaactacggcatcatgtccttc
aaccacccgctgaacctgaccaaggagcagctgtcgcaggtggccctggtaacgacctct
gtggacgttctggtttccatctgtgtcatcttcgccatgtccttcgttcctgcgagcttc
gtggtcttcctcatccaggagcgagtcaacaaagccaaacacatgcagttcatcagcggc
gtgcagccactgctctactggacggccaacttcctttgggacatgtgtaactactttgtc
ccggccgccctcgtcatcctcatctttgtctgctttcaacaaaaagcctatgtgtcatct
gccaacctgccggttctcgcgctgctgctgctgctctacggctggtccatcactcccctc
atgtacccggcatccttcttcttcaccatccccagcacggcttatgtcgtcctcaccagc
gtcaacatcctcatcggcatcaacggcagcatctccaccttcgtcatggagctttttgga
gaccacgagatcggaggcatcaacgacatcctgaagaatgttctgctcatctttccacac
ttctgtctcggccgaggactcatcgacatggtgaagaaccaggcgatggccgacgccctc
gagagatttggtgagaacaggttccgctcgcctctggagtgggacatggtggggaaaaac
ctctttgccatggctgtggagggagtggtcttcttcatcatcactctcctcatccagtac
aagttctgcatcaagcccaggccgatcagtaagctcaccaagatgggatctctgggagag
gaggatgaggatgtggcccgggagagacagcgcatcgtccaaggtcttggacagggagac
atcctggagctccgccagctcaccaaggtgtttaagaggaagcagaagccggctgtggat
agactttgtgtggggattccacctggagagtgttttggccttctcggggttaatggagct
ggaaaaacaacaaccttcaagatgctgactggggacaccatggtgactagtggagaagcc
ttcctggctggaaaaagcatcctcagggagatcgacgaggtccatcagaacatgggctac
tgtcctcagtttgacgccatcaacgagctgctgacgggaagagagcacctggagctgtac
gccgtgctcagaggcgttcctgggaacgaagtgtgcgacgtggctgagtggggcatcagg
aagttgagcctgctgaagtacgcggacaaaagagctggaagctacagcggaggaaacatg
aggaagctgtcgacggccatctctctgatcggagcgccccctgtggtcttcctggacgag
cccaccaccggcatggaccccaaggcccgccgcgccctctggaactgcatccacagcgtg
attaaacaggggcgctccatcgtcctcacctcccacagtatggaggagtgtgaggctctg
tgcaccaggatggccatcatggtgaacggcaggtttagatgtttgggcagcgtccagcac
ctgaagaacaggtttggggacggctacaccattattctgcgggtggcggggcccgaccca
gacctgctgcccgtcatgaagttcatcgagagcgagctgagcggcagcacgctgaaggag
aagcaccgcaacatgctgcagtaccagctgccctcatcgcttacgtcactcgcacacatc
ttctccatcctcgccaagaacaaagacacgctgcggatcgaggactactctgtcactcag
accacactggaccaggtgtttgttaactttgcaaaggaccagagtgatgactacgtcacc
aaagatgcttccgtaaggcgaaaagacaccattattgaagtgccagaacttggctccgcc
catggagcagctgagggaggggccagccagagggagagcatcatgtga
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integrated database retrieval system
