Oryzias latipes (Japanese medaka): 101163319
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Entry
101163319 CDS
T02443
Name
(RefSeq) ATP-dependent RNA helicase DDX19B
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03013
Nucleocytoplasmic transport
ola03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101163319
03015 mRNA surveillance pathway
101163319
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101163319
Enzymes [BR:
ola01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101163319
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101163319
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
101163319
NCBI-ProteinID:
XP_004069216
UniProt:
A0A3P9KWU5
H2MNJ1
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All DBs
Position
5:29353535..29363417
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AA seq
488 aa
AA seq
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MATDSWAQAVDEQEAAAESLGNLQLKEKPGENGMLAGAADFSNTAPKPASDGETKNAEDD
DSENKAAQSLLNKLIRNNLVNTTNQVEVLQKDPNSPLYSVKSFEELRLKPQLLQGVYAMG
FNRPSKIQETALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSHVDPNNKFPQCLCVSPT
YELALQTGKVIEQMGKYYPEVQLVYAIRGNKLQRGMKLQEQIVIGTPGTMLDWCSKFKFI
DPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPKNCQMLLFSATFEESVWSFAQRIVPE
PNIIKLKREEETLDTIKQYYVLCNSKEEKFEALCNIYGAITIAQAMIFCHTRKTAGWLAG
ELSREGHQVALLSGEMQVEQRAAVIERFRDGKEKVLVTTNVCARGIDVEQVSVVINFDLP
VDKDGNPDNETYLHRIGRTGRFGKRGLAINMVDSRMSMNILNRIQEHFNKKIEKLNTDDL
DEIEKIAS
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggctacggactcctgggcacaggcagttgatgagcaagaagctgcagcagaatcgctg
gggaatcttcaattaaaagagaagccaggagaaaatggcatgttggcaggcgcagccgat
tttagcaacacagctcctaaacccgcatctgatggagaaacgaagaatgcagaagacgac
gacagcgagaataaagcagcgcagtcgctgttaaacaaactgatccggaataatcttgtc
aatacaacgaatcaagtggaagttcttcagaaggatcctaattctccactctactctgta
aagtcttttgaagaattgcgtcttaaacctcagctgcttcaaggagtttatgcaatgggt
tttaacagaccatctaaaatccaggaaacggctttacccatgatgctggcagagcctcca
cagaatctgattgctcagtcacagtcagggacgggaaagacggctgcttttgtactggcc
atgctcagccatgttgaccccaataataaatttcctcagtgtctgtgtgtgtcgcccact
tatgagctggcgctccagactggcaaggtgatcgagcagatgggcaaatattaccctgaa
gtccagttggtttatgccatcagaggaaataaattgcagcgaggtatgaaactacaggaa
caaatagtcatcggcacgcctggtaccatgctggactggtgcagcaagttcaagtttata
gatccaaagaagatcaaagtgttcgttctggatgaagccgacgtcatgatcgccacgcag
ggtcaccaggaccaaagtatacgaatccagaggatgctgcctaaaaactgccagatgttg
ctgttctctgctacatttgaggagtccgtctggagctttgctcagcgcattgttcccgag
cccaacatcatcaaactgaagagggaggaggagactctggacaccatcaaacagtattat
gtgctgtgtaacagcaaggaggagaagtttgaagctctgtgtaacatctacggcgccatc
accatcgctcaggccatgatcttctgtcatacgaggaagactgctggttggttggctgga
gagctgtccagagaaggtcaccaggtggcgctgctcagtggagaaatgcaggtggagcag
agggcggccgtcattgaacgcttcagagacggaaaggagaaagtcctggtgacgacaaat
gtttgcgctcgaggcattgatgtcgaacaggtttcagtggtaatcaattttgatttgccg
gtcgacaaagacggtaaccccgacaacgagacctacctgcacaggattgggcgcacgggt
cgatttgggaagagaggactggccatcaacatggtggacagcaggatgagcatgaacatc
ctcaacaggatccaggagcatttcaataagaagattgaaaaattaaacactgatgatctg
gatgaaattgagaaaattgccagctaa
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