KEGG   Oryzias latipes (Japanese medaka): 101163395
Entry
101163395         CDS       T02443                                 
Symbol
rfc2
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola03030  DNA replication
ola03410  Base excision repair
ola03420  Nucleotide excision repair
ola03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ola00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    101163395 (rfc2)
   03410 Base excision repair
    101163395 (rfc2)
   03420 Nucleotide excision repair
    101163395 (rfc2)
   03430 Mismatch repair
    101163395 (rfc2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ola03032]
    101163395 (rfc2)
   03036 Chromosome and associated proteins [BR:ola03036]
    101163395 (rfc2)
   03400 DNA repair and recombination proteins [BR:ola03400]
    101163395 (rfc2)
DNA replication proteins [BR:ola03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    101163395 (rfc2)
  DNA Replication Termination Factors
   ELG1-RFC complex
    101163395 (rfc2)
Chromosome and associated proteins [BR:ola03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    101163395 (rfc2)
DNA repair and recombination proteins [BR:ola03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     101163395 (rfc2)
  Check point factors
   HRAD17(Rad24)-RFC complex
    101163395 (rfc2)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_lid_RFC1 RCF1-5-like_lid nSTAND_NTPase5 AAA_22 AAA_14 AAA_16 Viral_helicase1 Mg_chelatase AAA_11 Rad17 RuvB_N DEAD AAA_19 MipZ nSTAND3 AAA_5 AAA_assoc_2 AAA_18 AAA_24 ABC_tran AAA_30 AAA_23 AAA_28 RNA_helicase AAA_25 MeaB NTPase_1 MCM SLFN-g3_helicase AAA_2 DNAX_ATPase_lid FtsK_SpoIIIE IstB_IS21 AMP-binding_C_3 bpMoxR ATPase_2 DUF815
Other DBs
NCBI-GeneID: 101163395
NCBI-ProteinID: XP_004086351
UniProt: H2MX50
LinkDB
Position
7:complement(28597634..28604160)
AA seq 355 aa
MDAEMSQAENGQKAGESGQKSDTGESSSKSSGYSYDLPWVEKYRPLKLNEIVGNEETVSR
LEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGSAMKDAVLELNASNDRGIDVVRNK
IKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRIMEIYSKTTRFALACNASDKIIE
PIQSRCAVLRYAKLTDGQILSRLQEVIEKERLSVSDDGLEAVIFTSQGDMRQALNNLQST
HSGFGYINSENVFKVCDEPHPLLVKSMLGHCVDGNIDEAYKVVEHLWGLGYSPEDIIGNI
FRVCKTYQMAEYLKLEFIKEIGYTNMRVAEGVNSLLQMAGLLGRLCSKTAPPAAS
NT seq 1068 nt   +upstreamnt  +downstreamnt
atggacgcagaaatgtcgcaggcagaaaatgggcagaaagcaggagaaagcggacaaaag
tcggacaccggcgagtcttcgtctaagagctcaggatattcgtacgatctgccctgggtg
gagaagtaccggccgctgaagctgaacgagatagttggaaacgaggagaccgtcagccga
ctggaggtgttcgccagggaggggaatgtcccgaacattatcatagcgggacctccaggg
accggaaagaccaccagcatcctgtgtttggcccgagcactgctggggtctgccatgaaa
gatgccgtgctggagcttaatgcgtcaaatgacagaggcattgatgtggtgaggaacaaa
attaagatgtttgctcagcagaaggtcacgctgcccaaaggtcgacacaaaatcatcatc
ctggatgaagctgacagcatgacggatggagctcagcaggccttgaggaggatcatggag
atctactccaagaccacccgctttgcgctcgcctgcaacgcctcagataagatcatcgag
cccatccagtctcgctgcgcggtgctgcgctacgccaagctgaccgacgggcagatcctg
tcccggctgcaggaggtgatcgaaaaagagcgcctctcggtgtcggacgacggcctggag
gccgtcatcttcacctcccagggggacatgaggcaggcgctgaacaacctgcagtccacc
cactccggcttcggctacatcaacagcgagaatgtcttcaaagtgtgcgacgagcctcac
cctctgctggtgaaaagcatgctgggacactgtgtggacgggaacattgacgaggcgtac
aaggtggtggagcatttgtgggggctgggctactccccagaggacatcataggcaacatc
ttcagggtctgcaagacctaccagatggcagagtacctgaagctggagttcatcaaggag
attggatacaccaatatgcgggtggctgaaggcgtcaactccttgctgcaaatggccggt
ctgctgggacgactctgcagtaagacggcgccccctgctgccagctga

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