Oryzias latipes (Japanese medaka): 101163418
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Entry
101163418 CDS
T02443
Name
(RefSeq) E3 ubiquitin-protein ligase RNF38
KO
K19041
E3 ubiquitin-protein ligase RNF38/44 [EC:
2.3.2.27
]
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ola04121
]
101163418
Enzymes [BR:
ola01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101163418
Ubiquitin system [BR:
ola04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
101163418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-rbx1
zf-C3HC4_2
zf-C3HC4
zf-RING_5
zf-C3HC4_3
zf-ANAPC11
zf-RING_UBOX
VPS18_RING_C
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
101163418
NCBI-ProteinID:
XP_023814871
UniProt:
H2LDT3
LinkDB
All DBs
Position
10:complement(13869444..13879758)
Genome browser
AA seq
642 aa
AA seq
DB search
MDPPRIRSRSRSGFYHFAINGSVGTNGNAAANGNVMSNGGGGGGGGGSYPPQSSPSWALH
HGGRSYPENQQQQQQLQQQQQHIQRSYLSAGVPRHSVHGAHRNPGAGGVLHFHPDNVCVE
DRDKMEDSPTPKRQRLSQQSMIDLSSAPPSTPSSPIRPWELPPSRRPHPHFIPERCHTPV
RNRRSPPMRRQRGRRDRLTRHHHHHHGHSNGNNHHYNSNNNHHNHHHPNAHHHHHSHHGP
ALGHQDENYRHLVPPQGYPPYSQQPPRGPGLDERPGYHPPNPSPRPLHQSPNLSPRLLHP
GAHPQHPHPPQQQSSVVLDLHEQSSVPASFPVSPPGAPPGLQARSGPQQIPACSVVFSGQ
HYPVCSVPPPVLQTCSVQHLPMPYPFPSLLSSDPAFLIPPPHLSHAPAHLSHHPPHLPQP
GQFGPYPAQQARSPLQRIENDVELLGEHLSLGAGLHYPPATHPALTPHSTQLPFLSHDPL
SQEFFGMSYPNFIPRRLPGRRYRSQQLPLSPYHPSLLRYFLSMLPVQPTGPAISLELDVD
DGEVENYEALLNLAEQLGEAKLRGLTKGDIEQLPSYRFNPNNHQSEQTLCVVCMSDFESR
QLLRVLPCSHEFHGKCVDKWLRANRTCPICRADASEVQRDSE
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atggaccccccaagaattcggtctcgatctcggtctggcttctatcattttgccattaac
gggagtgttgggaccaacgggaacgcggccgctaacggcaatgtgatgagcaacggcggc
ggcggcggcggaggaggagggagctacccgccgcagagcagcccgagctgggcgctgcac
cacggtggtcggagctacccggagaaccagcagcagcagcaacagctgcagcagcagcag
cagcacatccagaggagctacctgtccgcgggggtaccgcgccactccgtgcacggagcc
caccggaaccccggggccggtggagtgctgcatttccatccagacaatgtttgcgttgag
gatcgggacaagatggaggacagtcccaccccaaaaagacaacgtctttcccagcagtct
atgatagatctgagctctgcccctccctccactccatcttctcctattcgcccatgggag
ttgcctccaagtcgaagaccgcaccctcatttcataccagagagatgccatacgcctgtt
aggaaccgccgcagccccccaatgagacgccagcgtggccgtcgagaccgactgacacgt
caccaccatcatcaccatggccacagcaacggcaacaaccaccattacaacagcaacaac
aatcatcacaaccatcaccaccccaacgcccaccaccaccaccactcccatcatggccct
gcactgggccatcaagatgagaactacagacacctggttccacctcagggttacccaccg
tacagccagcaaccccccagaggcccagggctggatgaacgtccaggctaccatccccca
aatccctctccgaggcctctccaccagtcaccgaacctgtctcccaggctcctgcaccct
ggggcccatccacagcaccctcacccgcctcagcagcagagcagtgttgtgcttgacctc
cacgagcagagttcagttccagcatcctttcctgtgtctcctcctggagcgccgcctggc
ctgcaggctcgctccggcccacagcagatcccagcatgctcggtcgtcttcagtgggcaa
cactatcccgtttgcagcgtccctcctcccgtacttcagacctgttctgttcagcactta
cccatgccatacccattcccatccttactatcaagtgacccagccttcttgattcctcct
cctcacctcagtcatgcccccgctcacctttcccatcatccacctcacttgccacagcct
ggacagtttggaccttatcctgcccagcaagcccgttcaccgttacagaggatagagaat
gatgtggagctgcttggagagcatctgtctttgggggcggggctccattatccccccgcc
acccaccctgctctgaccccacactccacacaactccccttcctctcccatgatcctctg
tcacaggagttctttggcatgtcctatcctaacttcattcctcggcgtctccctgggcgg
cggtaccgctcccagcagcttccactttcgccttaccacccgagcctgttgcgttacttc
ctgtcaatgctgcctgttcagcccacaggtcctgcaatcagcctagagctggatgtagat
gatggagaagtagagaactatgaggccctcctgaacctcgccgagcaactgggagaggct
aagctgagaggactgaccaaaggggacatcgaacagcttccctcttatcgattcaatcca
aataaccaccagtcggaacaaacactgtgcgtagtgtgtatgagtgactttgagtcgcgt
caactgctgcgagtcctgccctgcagccatgagtttcatgggaagtgtgttgacaagtgg
ctaagggccaacagaacttgtcccatttgtcgtgcagatgcctcggaggtccagagagac
tcagagtga
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