Oryzias latipes (Japanese medaka): 101163515
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Entry
101163515 CDS
T02443
Name
(RefSeq) probable E3 ubiquitin-protein ligase TRIM8
KO
K12001
tripartite motif-containing protein 8 [EC:
2.3.2.27
]
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ola04121
]
101163515
Enzymes [BR:
ola01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101163515
Ubiquitin system [BR:
ola04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
101163515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_5
TRIM_CC
RING_XB3-XBAT31
zf-RING_6
Baculo_PEP_C
DUF1664
FliD_C
Motif
Other DBs
NCBI-GeneID:
101163515
NCBI-ProteinID:
XP_004077443
UniProt:
H2LX39
LinkDB
All DBs
Position
15:complement(23422006..23433424)
Genome browser
AA seq
565 aa
AA seq
DB search
MDESWKNCFEEELLCPICLNVFDEPIQLPCKHNFCKGCISEAWAKDSAAVRCPECNHDYD
QKPTLEKNFKLANIVKRFNALNSDKVPPVLHCVLCRRGPPLPVRKVCLRCKEPCCQTHIQ
THLQQPCTAPGHLLVDAEELSAWTCPSHEEYRLLHCEEEQVALCPFCCLSHCTNQRHTVR
DVDTQRVQMQAMLMRQQDRLEGRVQNIDEQLNKLESDKTLMKDAVSELKDRVRAQYRRMQ
ALLEANQEETMQMLESTYMMYVRKNSQQSLQLNEKRQEAEKLLSSVQTVFQRVESVNFMK
NTKPYQLLMDRSNTHLSAAVPSVRVGQLNSHHFLSDLSTREKNLRKMLEEPFNEASILEL
VQSLGTSAGSQLGMSSGLQKRKYSMAFLESSTQNSTSQDPPPLLYNGKKSFLSDQSHQIS
SMYSSEVLPQNPHGGPGHSHLLETSAHHMMGLGSSSSHHSGNLFPASHFASGASSQQAMY
EGRKVLMCTLNNCCCSRAPAARAHPPYPASDSFPSVTSQEFPPLPSSQTLQHFPMRGLVE
APQGARHPDFYGLYGQSSTKHYGTK
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atggatgagagctggaaaaactgcttcgaagaggagcttctttgtcccatctgcctgaat
gttttcgatgagccaatccagctgccatgcaagcacaacttctgcaagggttgcatatct
gaggcatgggccaaagacagcgcagccgtccgctgtccagaatgcaaccacgactacgac
cagaagcccaccctggagaagaacttcaagcttgccaacattgtgaagcgattcaatgct
cttaacagcgacaaggtccccccggtgctgcactgcgtcctctgcagacgaggccccccg
ctgcctgtcaggaaagtgtgtctgcgctgcaaggagccctgctgccagactcacatccaa
acccacctgcagcagccgtgcacggcaccaggacacctgctggtggacgcggaggagctg
agcgcctggacctgtcccagtcatgaggagtacaggctgctgcactgtgaggaggagcag
gtggctctgtgtccgttctgctgcctctcccactgcacgaaccaaagacacacagtgcgt
gatgtggatacacagcgcgtgcaaatgcaggccatgctaatgaggcaacaagaccggctg
gagggtcgtgtgcagaacatcgatgagcagctcaacaagctggagtcagacaagacactg
atgaaggacgctgtgtctgagctgaaggatcgtgtcagagctcagtatcggaggatgcag
gcactgctggaggcaaaccaggaggagaccatgcagatgctggagagcacttacatgatg
tatgtgaggaaaaactcccagcagtctttgcagctcaacgagaagaggcaagaagcagaa
aaactcctgagctccgtgcaaactgtgttccagagagtagagagtgtgaacttcatgaag
aacacaaaaccgtaccagctgctgatggacaggtcaaacacacacctcagtgctgcggtc
ccttcagtccgagtgggccagctcaactcccatcattttctgtcggacctgtctacacga
gagaagaacttgcgaaaaatgctagaagaaccgttcaatgaagcgtccattctcgagctc
gtccagtctctcggcacctccgctggctctcagctggggatgagttctggactacagaaa
aggaaatacagcatggcctttctggagagcagcacccaaaactccacctcccaagatcct
ccacctttgctctacaatggcaagaagtcctttctgtccgaccagagccatcaaatttcc
tccatgtattcttcagaggtcctcccccagaatcctcacggtggcccgggccacagtcac
ctccttgagacctctgcccatcatatgatgggattggggtccagttccagccaccactca
gggaacttatttccagcctcccacttcgccagtggagcttcgtcgcaacaagccatgtac
gaggggaggaaagtgctcatgtgcacgctgaacaactgctgctgctcccgagcgcccgcc
gcccgcgcccatcctccatacccggcctcagactcgttcccctccgtgacctctcaggag
ttccccccacttccttcaagccaaacactgcagcattttcccatgagggggctggtggaa
gccccacagggtgccaggcaccccgacttctacgggctgtacggccagtcttcaaccaag
cattacggaaccaagtga
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