Oryzias latipes (Japanese medaka): 101163614
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Entry
101163614 CDS
T02443
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101163614
03036 Chromosome and associated proteins [BR:
ola03036
]
101163614
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101163614
Chromosome and associated proteins [BR:
ola03036
]
Eukaryotic type
Gene silencing
piRNA pathway
101163614
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
Ago_hook
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
101163614
NCBI-ProteinID:
XP_023805553
LinkDB
All DBs
Position
19:2368636..2386038
Genome browser
AA seq
2050 aa
AA seq
DB search
MADASAPSYVIPEKRGASGQEQQFMEDKKRKKDDKRKREASQKVTEQKNKVPDLTKPATA
QSPASQSSSASPSPGPHPSASSSPATLGPGSAATPSQGGNNAKRLAVANGQPSTSSSSST
SGTTGAAGNGSAGSGGGSQATQQPQRYMPREVPPRFRCQQDHKVLLKRGQPPLSSMLLGG
GGGGDNANSNMAAASADSGMAASSMALTSSSVAASTTSSNYANSMWGASSGSQASSQGRE
KVIVDGNDEEEWPSIGGGDGGNSGIGGMPLNSTSASGSRSSPTSSFSLPNECMPSSSGVA
WGTTGGGSVAAAGPLLQQPSSLSKAPAVLGSHDASGPVDGNSGVPGANFSPNANPSAWPA
LVQQDGPSAAGEGGPTSFHHQGSGGSANNSASLGLGGGAVGVLGAHPSISVNQSSAHQHQ
LHQMQSRDREAGGSKWDNEAAGPKSAGGESIGGADHGLGGGRASVDDDSLASSWRGQPSC
PAANSKMGASRTDGWEGGQGDKETSGWGYPSPTSAVNAWGSAGNGGNGSQTSGVSQGGWG
LAGVEGERGVSGSDWGGNSASVGVANAGHEEGGVCSSKSSSSGGSTGGNPPAACSSSSTT
TTKTTAWDNQKGEGETGEWGDGAGGQRTRGGSSSSGGNSRSGSGPNSSRPRRQALDAEAA
LQNLLSRSDLDPRILSNSGWGQTQIRQNTAWEVEDLAGSNRGGTPSASLKHPSSGGGPQY
SSGPRTPSTDSMGPGGSTSMVPSTGSTGDGWESSSNSSSSGASLSGRPQQPLSIRNLGGT
QSGPATTAAPGMGSGMVARPSQQAKQMEWVGGNGDGGKGWGDEEWRSRREKGGGWGEIGQ
QCDSASGGWGGGQQERGTGGWKEAVENGERGGWGSDPKVGSGKDWMEQESKSNSGGGGWV
DERRNGGHSGGDSGASGWGSWDDNAPRRNWGTGGGGVDSVGGMGSKPHAGLGGVNKIHQM
PNSQSGSASGLQAQLQQQQSQPRNQQPMDQGGGGRKPFSQVTTHNQSSGWPSEPIPGGSE
PSGWEEPSPQSISRKNDIDDGTSAWGDPTHYNYKPVNLWDKNSASGVQQPHVQAPPPQQP
GPAVQQQQPARPPAAAMGDAPGWGPSPASPTVDNGTAAWGKPTDAPSGWGDPDEAGVKTQ
CWGNPPSNPVRSGSKSMQDGWGDKESSMDASRHASWEDEEDAGGMWNSTGSQGSGSSWGQ
GSNGGWGQSQQGKKPSNKCLWSPDVVSQGPVKSAGGDSWMSHINRQFSNMGLLSDDPSSP
NMDLAPGSLQEKKMEMEKRGGMNDYNGDLRKGGRGGGGGGMYRPPGSKEASPGDAGPYYD
KTLHLLSQDGCPGEEGPCSLYSPPTVFKPHSLFNHSIPFRQGAPSIFGSSGGMAQSRHQP
TIPSSNHSPGIRAQVPHQFLSPQVPGSVLKQMPPPSGSMGGVGGMGGVTGVGGGVFPPQL
SPQHIAMLSSIYPPHIQLQLACQLLLQQQQQQQQQQPPPQQLLQNQRKFPPNVRQQTDPQ
LARIMTVLQQQRQQQQVGGLSGSKLSPSHHGLGPKLDPLPHPGLGSSVPDLQQKNLGPYS
GFGPGVNLPGLDLGGSMGGQQSRFKWMMEGNCSPDSSSPENAYHKNGPMAPHHMKMQASS
PYSQYDGLVDGLSDSWHRTPGNKMASKPSSTPSWPPEFQPGVPWKGIDRVDPESDPYMTP
GSMMGNAASPGLNDSEHQLLENSDSTPPLNTLLPSPGAWPYSASDSPLNHAHNPAKYTDY
KTSWPPEPIGHKSWKASRSSSSQSQMSRPPPGLVGQKQPSSSPWSGGAPRLAGRGWGSGA
VTAASTWSDGSVRDSCWLVLSNLTPQIDGSTLRTICMQHGPLLTFHLGLTQGTALIRYGS
KQEASKARSALHMCVLGNTTILAEFVSEEDVARYIAHSQAGGGGSGGTAGSSAGPGSTAA
SAAGASSNGGGCERGGAVGSSMGGVEGASSTAGGASSSSGWQSLESTGSSLDPPAGQGPG
LGIFSQWSTNGAGGAGAVEPGRQGLWGGMGATAYPTSNLWASPALEDRHQMGSPASLLPG
DLLGGGADSI
NT seq
6153 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgctagcgcaccttcatatgtgattcctgagaagagaggagcatcgggtcag
gagcagcagttcatggaagacaagaaaaggaaaaaagacgacaaaaggaaaagggaagcc
tctcagaaggttacagaacaaaaaaacaaagtgccagacttgacaaagccagctactgcc
caatctcctgcctctcagagcagctctgcctcccccagccctgggcctcatccctctgct
tcttcatctccagcgaccctaggccctggcagtgctgccaccccatcacagggcggcaac
aatgccaagcgcctggcggtggccaacggacagccctccacctcaagttcttcctccacc
tccggaaccactggggctgccggaaacggcagtgcaggtagcggaggcggaagccaggct
actcagcagcctcagcgctacatgccgagagaagtgccgccccgattccgctgccagcag
gaccataaagtgctactgaagaggggccagccaccgctgtcctccatgctgctgggaggt
gggggaggaggagataatgcaaattcaaacatggctgctgcttcagcagattctggtatg
gctgcttcctcaatggccctcacctcatcatcagttgctgcttctacaacaagttctaat
tatgcaaattccatgtggggggcaagctcaggcagtcaggcctcctctcagggcagggag
aaggtcattgtcgatggcaacgatgaagaggagtggcctagtattggtggcggcgacgga
ggaaacagcggcatcggtggaatgcccctgaacagcaccagtgcctctggcagccgctcc
tctcccacctcctcattctctttgcccaatgaatgtatgccctcgtccagtggcgtggcg
tgggggacgactggaggaggttctgtagctgcagctgggcctctgctacagcagccatcc
tcactttccaaagcccccgctgtgctggggagccacgatgccagtggccccgttgatggc
aacagtggggttccaggtgccaacttcagtccaaatgccaacccttcggcctggcctgcc
ttggtgcagcaggatggcccctctgctgctggggaaggaggtcccacttccttccatcat
cagggctccggagggtctgccaacaactccgcctccttggggctgggagggggagcagtt
ggggtgctcggggctcatccgtctatatctgtgaatcagtcaagcgcccatcagcaccaa
cttcaccaaatgcaatccagagacagagaggcgggaggatcaaagtgggacaatgaagca
gcgggaccaaaaagtgcagggggggaaagtattggaggagcggaccacggcttgggaggg
ggcagagctagtgtggatgacgacagccttgcctcttcctggagaggccagccttcttgc
cctgcagccaactccaaaatgggtgcctcgagaactgatggatgggagggtgggcaaggg
gacaaggagacctcaggttggggataccccagccctacaagtgcagtcaatgcttggggc
agtgctggaaatgggggcaatggtagtcaaacctccggggtatctcagggagggtggggg
ttagctggtgtagaaggggagaggggggtttctggtagcgattggggtgggaactctgct
agcgttggtgtagctaatgcaggacacgaggaagggggggtctgcagtagtaaaagcagc
agtagtggaggaagcacggggggcaaccccccagcagcttgctcctcctcttcaacaact
accactaaaaccacagcctgggacaatcagaaaggagagggagaaacaggggagtggggg
gacggggcggggggacagcggacgcgaggagggtcttcctccagcggtggtaattccaga
agtggaagtggtcccaacagcagtcgtcctcgccgacaagcacttgatgctgaagctgcc
ttacagaacctgctcagccggtcggacctggaccctcgcatcctgtccaactcggggtgg
ggccagacgcagatccgacaaaacaccgcctgggaagttgaggacttagctggctccaac
aggggcgggactccttcagcatcattgaaacatccatcctctggtggtggtcctcaatat
tcaagtggacctcggacccccagcactgattctatggggcctgggggcagtacctccatg
gttccctctactgggtctactggagacggatgggagagcagcagcaacagtagcagcagt
ggagcctccttgtctgggagaccccaacaacctttaagcattagaaatcttggcggcaca
caatctgggccagcgaccaccgccgcgccgggtatggggtcggggatggtggcccggccg
agccagcaggcgaagcagatggagtgggtgggaggcaatggcgatgggggcaagggctgg
ggagacgaggaatggagaagcagaagagaaaaaggaggcgggtggggcgaaattggacaa
cagtgcgactctgcgagtggaggttggggaggtggccagcaggagaggggaactgggggg
tggaaggaagctgtagagaatggagaaagaggtgggtgggggtcggatccaaaagttgga
tcaggtaaagactggatggagcaggagtccaaatcaaatagtggcggaggtgggtgggtg
gacgagaggaggaatggaggacactcaggtggggactcgggtgcgagcgggtggggtagc
tgggatgacaatgctcctcgtagaaactggggcacggggggcggtggggtcgattcggtt
ggaggcatggggtccaaacctcacgcgggtttaggtggagtgaacaaaatccaccagatg
ccaaacagccagtcgggctccgcctccggcctacaggcacaactgcaacagcaacaatca
cagccccgcaatcagcaaccgatggaccaagggggcggcgggagaaaacccttctcccaa
gttacgacacacaaccaaagctcgggctggccctcggaaccaatccccggtggatccgag
ccaagcggctgggaggaaccttcccctcagtccatcagcaggaagaacgacatcgatgac
ggcacatcggcgtggggagaccccacccactacaattacaagccggtcaacctgtgggac
aaaaacagtgcttctggtgtccagcaaccacatgttcaggctccgcctccgcagcaacca
ggacctgctgtgcagcagcagcagcccgccaggccgccagcagcggcgatgggagatgca
ccgggctgggggccttcccctgccagtcctacagtagacaatggcacagcagcttgggga
aaaccgacagacgccccatccggctggggcgaccccgatgaagccggagtgaagacccag
tgctgggggaaccctccctcaaaccccgtcagatccggttcaaagtctatgcaagatggc
tggggggacaaagagagctcgatggacgcctcgcgccacgccagctgggaggacgaggag
gatgcgggtggcatgtggaacagcacaggctcccagggaagcggctcctcctggggacag
ggcagcaatggaggctggggacagagccaacaggggaagaagcccagcaacaagtgtctt
tggtctcctgacgtcgtctctcagggccccgtgaaaagcgccggaggagattcctggatg
agtcacatcaacagacagttctctaacatggggctgctgagcgacgatcccagcagcccc
aacatggacctggctccaggttctcttcaggagaagaagatggaaatggagaaaagggga
ggaatgaatgattacaacggagacctgaggaaaggagggagaggcggtggagggggcggg
atgtaccgtcctcccgggtctaaggaggcttcacctggggacgctgggccgtactacgac
aagaccttgcatttgctcagtcaggatgggtgccctggggaggagggtccctgctctctg
tactcgccccccactgtcttcaagccccattccctcttcaaccactctattccttttaga
caaggtgctcccagtatcttcggcagttcaggagggatggcccagtccagacatcagccg
actataccatcgagcaatcattctccagggattcgagcacaagtgcctcatcagttcctg
tctcctcaggtgccaggctccgtgctgaagcagatgccccctcccagcgggagcatgggc
ggtgtcggtggcatgggaggagtgacgggagtgggaggaggagtgttccccccacagctg
tctcctcagcacatcgccatgctcagcagtatctacccacctcacatccagcttcagctg
gcttgtcagctccttctccagcagcagcagcagcagcagcagcagcagccgccgccgcag
cagctgctgcagaaccagaggaagttccccccaaacgtccgccagcagaccgaccctcag
ttggcgaggatcatgacggtcctgcagcagcagaggcagcagcagcaggtgggggggctg
agcggctccaaactctccccttcacaccatggtctgggacccaagcttgatcccctgcca
catccgggcctgggcagctcggtgccggatctgcaacaaaagaatctcggaccctactcc
gggtttggtccaggggtgaacctgccaggtttggacctggggggctcgatgggcggtcag
cagtcccgttttaaatggatgatggaaggaaactgctcccccgactcttcatcacctgaa
aacgcctatcataaaaatggtcccatggccccccaccacatgaagatgcaggcgagctcg
ccgtactcccagtacgacgggctggttgacgggctgagtgacagctggcatcgcaccccc
ggcaacaagatggcttccaagccgagcagcacgccgagctggccgcccgagttccagcct
ggtgtgccatggaaaggaattgaccgcgtcgaccctgaatccgacccctacatgacccca
gggagcatgatgggaaacgcagcttctccaggactcaacgattcggagcaccagttattg
gaaaactccgattccactcctccactgaacaccttgctgccttcacctggtgcctggccc
tacagtgcctcagacagccccctcaaccatgcacacaacccagcaaagtacacagattat
aagacgagctggcccccggagccaatcggacacaagtcttggaaagccagccgcagcagc
agcagccagtcccagatgtcccgcccacctccaggcctggtgggtcagaagcagccgtcg
tcctccccgtggtcgggaggagccccccgcttagccggccgaggctggggaagtggagcc
gtcaccgccgcctccacctggagtgacggcagcgttcgggacagctgctggttggtgctc
agcaacctcacgccgcagatcgatggctccactctgagaaccatctgcatgcagcacggg
cccctgctgacctttcacctgggcctgacccagggaaccgctctgatccgctacggctcc
aagcaggaggcctcgaaggccaggagcgcccttcacatgtgcgttctgggtaacaccacc
atcctggcggagttcgtcagcgaggaggacgtggctcgctacattgcacattcccaggcg
ggaggaggggggagcggaggaaccgcaggcagctcggcgggccccgggtccaccgctgcc
tccgctgcgggggccagcagtaacggagggggctgcgagaggggcggggcagtaggtagc
agcatgggaggagtggagggggcctcctccactgcaggcggggcgtcttccagctccgga
tggcaaagtcttgaaagcacaggcagctctttggacccgccggccggccaggggcccggg
ctggggatcttcagccagtggagcaccaacggcgccggcggggcgggggcggtggagccc
ggtcggcagggactgtggggcggcatgggcgcaacggcgtaccccaccagcaacctctgg
gcctctccagcactcgaggaccgccaccagatggggagccccgcctccctgctgccaggg
gacctgctgggcgggggggccgactccatctga
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