Oryzias latipes (Japanese medaka): 101164080
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Entry
101164080 CDS
T02443
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03030
DNA replication
ola03420
Nucleotide excision repair
ola03430
Mismatch repair
ola03440
Homologous recombination
ola03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101164080 (rpa1)
03420 Nucleotide excision repair
101164080 (rpa1)
03430 Mismatch repair
101164080 (rpa1)
03440 Homologous recombination
101164080 (rpa1)
03460 Fanconi anemia pathway
101164080 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ola03000
]
101164080 (rpa1)
03032 DNA replication proteins [BR:
ola03032
]
101164080 (rpa1)
03400 DNA repair and recombination proteins [BR:
ola03400
]
101164080 (rpa1)
Transcription factors [BR:
ola03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
101164080 (rpa1)
DNA replication proteins [BR:
ola03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
101164080 (rpa1)
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
101164080 (rpa1)
MMR (mismatch excision repair)
101164080 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
101164080 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Pox_vIL-18BP
IBR
Motif
Other DBs
NCBI-GeneID:
101164080
NCBI-ProteinID:
XP_004075379
UniProt:
H2LJD1
LinkDB
All DBs
Position
13:10599217..10621424
Genome browser
AA seq
598 aa
AA seq
DB search
MTKLSEGAIEALANGTGGNEAILQLVNIRKIDGGSGPSRFRVMMSDGRHTLSSFMLSTQL
NCMAEENILAQNCVCLLKRHVTNVLKDGRRVVIILEIEVIKPAGEVGGKLGDPVPYNEAQ
KGVSQPAPAQENRLPLQPQNKIEVKSFNRDFGKKAPLAMPSTPGGSSKVVPIASLNPYQS
KWTIRARVTNKSGIRTWSNSRGDGKLFSMELVDESGEIRVTGFNQEVDKFFSLIEVGKVY
YISKGSLKIANKQYTSVKNDYEMTLNGESTILPCEESGDVPMMQCDFVPIGDLESRDKDA
IVDVIGVCKSVDEVTRLTTKTNREVSKRSLSLMDMSGKLVTVTLWGEEAEKFDGSGQPIV
AIKGAKLSDFGGRSLSASFSSTLMINPDIPEAYKLRGWYDKDGHAVEGQSLTELKGGSGG
GSTNWKTLSDLKNEHLGHGEKADYYSCIATVVYLRKENCLYQACPNQDCNKKVIDQHNGM
FRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKDSNESA
FDEVFQQANFKTFVFRNRVKLETYNDESRIKATVMDLKPVDHKDYIKSLIVNIRKLAM
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagctttcagagggcgcaatagaggctttagccaatggaaccgggggaaacgag
gccatcctgcagttagtgaacattcgaaagatcgatggaggaagtggaccatctcgcttc
cgggtgatgatgagtgatggacggcacacgttgtcttccttcatgctctcaacgcagctg
aactgcatggcagaggaaaacatcctggcccaaaactgcgtctgtcttctcaagagacat
gtgaccaatgtgctaaaggacggccgacgtgttgtgatcattttggaaattgaagtcatc
aagcctgctggagaagttggtggtaaattgggagaccctgttccttacaatgaagctcag
aagggagtctcacaaccggctccagctcaggaaaaccggcttccactgcagcctcaaaat
aaaatagaagtcaaaagtttcaacagagactttgggaagaaggctccgctcgccatgccc
agtactccaggaggaagctccaaagtggttcccatcgccagcctcaacccctaccagtct
aaatggaccatccgcgcacgtgttactaacaagagtggcattcgtacgtggagcaattct
cgtggtgacgggaagctcttctccatggagcttgtggatgaaagcggagagattcgagtg
actggatttaaccaagaagtggacaagttcttctccctgattgaggttgggaaggtctac
tacatctccaagggctccttaaagatcgccaacaagcagtacacatcggtaaagaacgac
tacgaaatgacgctcaacggagagtccaccatcctcccctgtgaggagagcggcgacgtg
cccatgatgcagtgcgactttgttcccatcggggacttggagagcagagacaaggatgcc
attgtggatgtgattggagtgtgcaaaagtgtggacgaggtgacccgcctcacaaccaag
accaaccgtgaagtgtctaagagaagcctaagtctgatggacatgtctgggaagctggtg
acggtcacactgtggggagaggaagctgagaagttcgatggttctggacagcccatcgtc
gccatcaagggtgccaagctgtcagactttggcggccgctcgctgtccgcctccttcagc
agcaccctgatgatcaacccggatattcctgaagcgtacaagctcagaggctggtacgac
aaggacggccacgccgtggagggccagtctctaacggagctgaagggcggcagcggtgga
ggaagcaccaactggaagacgctctctgacttaaagaacgagcacctgggacatggagag
aaggcggactactactcatgcatagctactgtcgtgtatctacgtaaggagaattgcctt
tatcaggcctgcccaaaccaagactgcaacaaaaaagtgattgaccagcacaacggcatg
tttcgctgcgagaaatgtgataaagagttccccaacttcaagtaccgcctcatcctctct
gccaacattgctgattatggggacaaccagtgggtgacttgcttccaggagagtgctgag
gccatcttgggtcagaatgcagcgtacctgggacagctcaaggactcgaatgagtctgcg
tttgatgaggtcttccagcaagccaacttcaaaacttttgtcttccgcaaccgagtgaag
ctggaaacgtataatgatgaatcccggattaaagccactgtgatggatttgaagcccgtc
gaccataaagactacatcaagagtctgatcgtgaacattagaaaactggctatgtag
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