Oryzias latipes (Japanese medaka): 101164093
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Entry
101164093 CDS
T02443
Symbol
copa
Name
(RefSeq) coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ola04131
]
101164093 (copa)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ola04147
]
101164093 (copa)
Membrane trafficking [BR:
ola04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
101164093 (copa)
Exosome [BR:
ola04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
101164093 (copa)
Exosomal proteins of bladder cancer cells
101164093 (copa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
TPR_COPA_B
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_RFWD3
ANAPC4_WD40
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
101164093
NCBI-ProteinID:
XP_004078629
UniProt:
H2LCD8
LinkDB
All DBs
Position
17:complement(3223336..3237974)
Genome browser
AA seq
1219 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWVLASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVETD
VRGISGVDLFGASDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
ELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAH
PNLNLFAAGHDSGMIVFKLERERPAYAVHGNMLYYVKDRFLRQLDFNSSKDTAVMQLRSG
SKFPVFSMSYNPAENAVLLCTRATNLENSTYDLYSIPKESDSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRLHSLLIKNLKNEIVKKVQVPSCEEIFYAGTGSLLLRDAEGVTLFDVQQK
RSLATVKIAKVKYVVWSADTSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDETGV
FIYTTSNHIKYALTSGDHGIIRTLDLPIYVTRVRGNSVYCLDRECRPRVLTIDPTEYRFK
LALVNRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEV
ALEAAKALDERSCWERLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLAKLRKMM
KIAEIRKDMSGHYQAALYLGDVSERVRILKNCGQKSLAYLTAATHGLDEEAEALKETFDP
EKETVPEIDPDAQLLQPPPPINPLDTNWPLLTVSKGFFEGAIPGKGGQMAADLDMEAAGG
EGWGDDAELNMDEDGFMDAPEGLDEGMVKEEGGGWDIDEEVELPPELDLPSGAGGGVEDG
FFVPPTKGMAPTQMWCNNSQLPVDHILAGSFETAMRLLHDQVGVVNFDPYKPLFMQTLSR
ARTCYLGLPSLPCLRGHPQRNWKDCGAKQGLPAVGLRLSDLIARLQQCYQLTTAGRFEEA
VERFRAILLSVPLLVVDNKQEITEAQQLITICKEYIVGLTMETERKKLPKDTLEQQKRLC
EMAAYFTHCNLQPVHMVLVLRTALNLFFKLRNFKTAAGFARRLLELGPKPDVAQQTRKIL
AACEKTLTDAHQLNYDPHNPFDLCAASFVPLYRGRPVEKCPLSGACYSPTFKGQICRVTQ
VTEIGKDVIGLRVSPLQFR
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgttaacaaagtttgaaacgaagtcggcccgtgttaaaggtctgagtttccatcccaaa
agaccatgggttctcgccagtctgcacaacggagtaatccagctgtgggactaccggatg
tgcacactgatcgacaaatttgacgagcacgatggtcctgttagagggattgatttccac
aagcagcaacctctttttgtgtctggtggagatgattacaaaatcaaggtgtggaactac
aaactgaggcggtgcctcttcaccctcttgggacacttggactacatcagaacgactttc
tttcaccatgaatatccctggattctcagtgcgtcggatgatcagaccatccgcatctgg
aactggcagtcaagaacctgtgtgtgtgtgctgacgggccataaccactatgtgatgtgt
gcccagttccacccttctgaagacctggtggtgtcggccagtctggaccagactgtgcga
gtgtgggatatctctggtctgaggaagaaaaacctgtccccgggtgcagtggagacagac
gtgcgcggcatctctggggttgacctttttggtgcctcagatgctgttgtcaagcacgtt
ctggaggggcatgaccgtggcgtcaactgggcagccttccatcccaccatgcccctcatt
gtgtctggagctgatgacagacaggtgaagatctggaggatgaatgagtccaaggcatgg
gagcttgatacctgccgtggccactacaacaatgtgtcctgtgcagtgttccaccctcgc
caagagctcatcctttccaactctgaagacaagagcatccgggtgtgggacatgtccaag
aggaccggagtgcagactttccgacgggatcatgaccgcttctgggtgctgggagcgcat
ccaaacctcaacctgtttgcagctggtcatgacagcgggatgattgtattcaagctggag
cgggaacggcctgcatacgccgtacacggcaacatgctgtactacgtgaaggaccgcttc
ctccgccagctggacttcaacagcagcaaagacactgctgtcatgcagctccgcagtggt
tcaaagttcccggtttttagcatgtcttacaaccctgctgagaatgcagttctactctgc
actagagcaaccaacctggagaacagcacctatgacctctactccattcccaaagaaagt
gactcccagaaccctgatgcaccagagggtaaaaggtcgtctggactgacagccgtttgg
gtggcaaggaatagatttgctgttttagatcgtctgcactcccttctgatcaagaacctg
aagaatgaaatcgtgaagaaagtccaggtgccgagctgtgaggagatcttctatgcaggc
acaggctcgctgctgctgcgtgacgctgagggcgtcacgctgtttgatgtgcagcagaaa
cgctctctggccactgtcaaaatcgccaaggtcaagtacgtggtgtggagcgccgacacc
agccatgtggctctgttggcaaagcatgctataatgatctgcaaccgtaagctggaaagt
ctctgcaacattcatgagaacatcagggtgaagagcggcgcctgggatgagactggggtc
ttcatctacaccacctccaatcacatcaaatatgccctcacctctggtgatcatggcatc
attcggactctggacttgcccatctatgtgacccgtgtgaggggcaacagcgtttactgc
ctggacagagaatgcaggccccgtgttctcaccatcgaccccacggagtaccgcttcaag
ctggccctggtcaaccgcaaatacgacgaggtgcttcacatggttcgaaacgccaagctg
gtgggccagtccatcatcgcctacctgcagaaaaagggctaccctgaggttgccctgcac
tttgtgaaagatgagaagactcgcttcagtctggctctggagtgtggaaacattgaggtg
gctttggaggccgccaaggccctagatgagcgcagctgctgggagcgtctgggtgaggca
gctctgcttcagggccaccaccaggtcgtggaaatgtgctaccaaaggaccaagaacttt
gacaaactcacgttcctttatctcatcactgggaatttggccaagctacgcaagatgatg
aagattgctgagatcaggaaggacatgagtggtcactaccaggccgctctctacctggga
gatgtgagtgagcgggtgcgcatcctgaagaactgtggacagaaatccttggcttatctc
actgcagccactcatgggctggatgaagaagctgaggcgctgaaggagacctttgaccct
gaaaaggagacggtgccagagattgaccccgacgcacagctgctgcagccgcctccaccc
atcaaccccctggacaccaactggcctcttctcaccgtgtcaaagggcttcttcgaagga
gccattccaggaaagggaggccagatggctgcagatctggacatggaggctgctggtggt
gagggctggggagacgatgctgagcttaacatggatgaagatggtttcatggatgctcct
gaaggattagatgagggaatggtcaaagaggagggtggaggctgggatattgatgaagag
gtggagcttcctcctgagctggatcttccgtctggagcaggtggtggagttgaggacggc
ttcttcgttccacccaccaaaggaatggctccaacccagatgtggtgcaacaactcccag
ctgcctgtggaccacattttggcgggctcctttgagaccgccatgagactcctccacgac
caggttggggttgtgaacttcgacccctacaagcctttgttcatgcagactctgtccaga
gcccgcacctgttacctggggctgccatcgctgccctgcctgcgtggtcatcctcagaga
aattggaaggattgtggggcaaagcaagggttgcccgccgtgggactccgtctgtctgat
ctcatcgctcgcctgcagcagtgctaccagctgaccactgctgggaggtttgaggaggcc
gtggagcgcttcagagccatccttctctctgtgccgctgctggtggttgataacaagcag
gagataacagaggctcagcagctgataacaatttgcaaagaatacatagtgggtctgacc
atggagactgaaaggaagaaactgccgaaagatacgttggaacaacagaagaggctctgc
gagatggctgcttatttcacccactgtaatctgcagccggtgcacatggttcttgtgttg
cgcacagccctgaatctcttcttcaaactgcggaacttcaaaacagctgctggctttgca
cgacgcctcctggagcttggaccaaagccagatgttgcacaacagacgcgcaaaatcttg
gccgcctgcgagaagaccctgacagacgctcaccagctgaactacgacccccacaatccc
tttgacctgtgcgccgcctcatttgttcccctgtaccgcggccgtcctgtggagaagtgc
ccgctgtctggagcttgttactcccccaccttcaaaggacagatctgcagggtcacacag
gtgactgagatcggaaaggacgtgattggtctgcgtgtgagtccactccagttccgctaa
DBGET
integrated database retrieval system
