Oryzias latipes (Japanese medaka): 101164198
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Entry
101164198 CDS
T02443
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101164198 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101164198 (cpsf2)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
101164198 (cpsf2)
U7-dependent histone pre-mRNA processing factors
101164198 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
ODP
Motif
Other DBs
NCBI-GeneID:
101164198
NCBI-ProteinID:
XP_004083472
UniProt:
A0A3P9HTL5
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Position
24:5328724..5335921
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AA seq
787 aa
AA seq
DB search
MTSIIKLTAVSGVQEESALCYLLQVDEFRILLDCGWDEHFSMDIIDAMKRYVHQVDAVLL
SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD
SAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCTLESINRPSLLITDSFNATYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGTYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLNLCHSLADLARVPSPKVVLCSQPDLESGFSRELFIQWCQNSKNSIILTYRTT
PGTLGRYLIDHPGEKMLDLEVRKRVKLEGKELEEYLEKEKIKKEAAKKLEQAKEVDVDSS
DESDMEDDLDQPVAVKTKHHDLMMKSEGSRKGSFFKQAKKSYPMFPTHEERIKWDEYGEI
IRLEDFLVPELQAAEDEKSKLDSGLTNGDEPMDQDLSVVPTKCISNMENLEIRARITYID
YEGRSDGDSIKKIINQMKPRQLVIVHGPPEASQDLAESCKAFSKDIKVYTPKLQETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVVKVDTGVMLEDRVKEEEEDGE
MPMETGQEVGIDHNATAVAAQRAMKNLFGEDEKEVSEESDVIPTLEPLPLTEIPGHQAVF
INEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRTEAGRIGLEGCLCDDYYKIRELL
YQQYAVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgattataaagctgacggccgtgtcaggggttcaggaggagtccgccctctgt
tatctcctgcaggtggatgaatttcgcatcctcttggactgtggatgggacgaacatttt
tcaatggacatcattgatgccatgaagcgctatgttcatcaggttgatgcagttcttctc
tcacaccctgaccccattcacctcggagccctcccttatgccgtgggcaaattgggcctc
aactgtaccatctatgccacaattcctgtctacaagatgggtcagatgttcatgtatgat
ctgtatcagtctcgaaacaacagtgaagacttcacacttttcaccctggatgatgtcgac
agcgcttttgacaaaatccagcagttaaaatactctcagattgtcaatttgaaaggaaaa
ggccatggtctttccatcactcctcttccagctggacacatgattggaggaaccatctgg
aaaattgtcaaggatggagaggaggagattgtatatgctgtggatttcaaccacaagaga
gaaatccacctcaacggctgcacgttagaaagcatcaaccgaccgtcattactcatcaca
gattccttcaatgctacatatgtacaaccgcgccgtaaacaaagagacgagcagctgctc
acaaatgtaatggagactctgcgtggagacggtaatgttcttatcgctgttgatacggct
ggtcgcgttctggagctggctcagcttcttgaccaaatctggagaacgaaggatgctggg
ctgggaacttatcctcttgctctgctcaacaatgtcagctataatgtggtggagttttcc
aaatctcaggtggagtggatgagtgacaagctcatgaggtgttttgaggacaagagaaac
aatccattccagttcagacacttgaacctgtgccacagtctggcagaccttgctcgagtg
cccagccctaaagtggtactttgcagccagccagacctggagtccggcttttccagagaa
ctctttatccagtggtgtcaaaacagcaaaaactccatcatcctaacttaccgcactacg
cctgggacactgggacgctacctcattgaccaccccggagaaaagatgctcgatctggaa
gtcagaaaaagggtgaagcttgaaggaaaagagttggaagaatatcttgaaaaggaaaaa
ataaagaaagaagcggcaaagaagcttgaacaagcaaaagaggtggatgtggattccagc
gacgagagcgacatggaagatgacctggatcagccggttgcagtgaaaaccaagcatcac
gatctgatgatgaagagcgaggggagccggaagggcagcttcttcaaacaagctaagaag
tcctatccaatgttcccaacgcacgaggagagaatcaaatgggatgaatatggagaaatc
attcggcttgaggactttctggttcctgaactacaagccgctgaagatgaaaagagcaaa
ctggactctgggctgacaaatggagatgaacccatggaccaggatctatctgtggttccc
accaaatgcatttcaaacatggaaaatctagaaataagagcacgcatcacatacatagac
tacgaaggccgctctgatggcgactccataaaaaagattatcaatcagatgaaacccaga
cagcttgttattgttcacgggcctccagaagccagtcaggacctggccgagtcctgcaag
gcgttcagcaaagacatcaaagtctacacacccaagctgcaggaaacggtggacgctacc
agtgagacacatatttaccaggtgcgtttgaaagactccctggtgagctctctgcagttc
tgcaaggccaaagacacggagctggcgtggatcgatggagtgctggacatgcgcgtggtg
aaggtagataccggtgtgatgctggaggacagagtgaaggaagaggaggaagatggcgag
atgcccatggagacaggacaggaggttggcatcgaccacaatgccacagcggtggcggcc
cagcgtgccatgaagaacctgttcggagaggatgagaaggaggtgtccgaggagagtgac
gtcattccaacgctggagccacttcctctgactgagattccgggccatcaggctgtgttc
atcaacgagcctcggctgtctgactttaagcaggtcctgctgagagagggcatccaggcc
gagtttgtgggaggagtgttggtgtgcaacaacatggtggctgtccgcaggacggaagcc
ggacgcatcggcttggaaggctgcctgtgtgacgactactacaagatccgggagctgctg
tatcagcagtacgctgttgtatag
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