Oryzias latipes (Japanese medaka): 101164466
Help
Entry
101164466 CDS
T02443
Symbol
rtcb
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ola03016
]
101164466 (rtcb)
Enzymes [BR:
ola01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
101164466 (rtcb)
Transfer RNA biogenesis [BR:
ola03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
101164466 (rtcb)
Prokaryotic type
tRNA splicing ligases
101164466 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
101164466
NCBI-ProteinID:
XP_004087012
UniProt:
H2N0L9
LinkDB
All DBs
Position
23:complement(23749986..23753748)
Genome browser
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLEKLSGTCWRIKKGFVPNMQVEGIFYVNEPLEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVNRSIGLPDVHSGYGFAIGNMAAFDMSDPNAVVSPGGVGFDI
NCGVRLLRTNLDERDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDNITVNDRQLACARITS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFGTTPDDLDMHVIYDVSHNIAKVEE
HIVDGKQRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISRKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagcagaagctacaacgatgagctgcagtacctggagaagctgtccgggacttgctgg
aggattaagaagggcttcgtgcccaacatgcaggttgaagggatcttctacgtgaacgag
cctctggagaagctgatgttcgaggagcttcgtaacgcctgtcgaggaggaggtgtgggt
gggttccttcctgccatgaagcagatcggaaacgtggcggcgctgcctggcatcgtgaac
aggtccatcggtctgccggacgtccactccggttacggattcgccatcggaaacatggct
gcgtttgacatgagtgatcccaacgccgtggtgtctccaggcggcgtgggattcgacatc
aactgtggcgtccgtcttctaaggactaacctggacgagcgggacgtccagcccgtgaag
gagcagctggcccagtcgctgttcgaccacatcccggtgggggtcggctccaaaggagtc
atcccgatgggagccaaagacctggaggaggcgctggagatgggcgtggactggtctctg
agggaggggtacgcctgggccgaggacaaggagcactgcgaggagtacggccggatgctg
caggccgaccccaacaaggtgtcgtccaaagccaagaagagaggcctgccgcagctggga
actctgggagcaggaaaccattacgccgagatccaggtggtggatgagatctacaacgac
tacgcagccaagaagatgggcatcgaccacaaggggcaggtgtgcgtgatgatccacagc
ggcagcagaggcctcggacaccaggtggccacagatgcgctggttgccatggagaaggcc
atgaagcgcgacaacatcacagtgaatgaccgacagctggcgtgcgcccgcatcacctcc
caggaggggcaggactacctgaagggcatggcggccgcagggaactacgcctgggtcaac
cgctcctccatgacctttctcaccagacaggccttctccaaagtgttcggaaccacgccg
gacgacctggacatgcacgtcatctacgacgtgtcccacaacatcgccaaggtggaggag
cacatagtggacggcaagcagaggacgctgctggttcaccgcaaaggctccacccgcgcc
ttcccgccgcaccaccctctgatccccgtggattaccagctcacaggtcagccggttctg
atcgggggcaccatgggaacctgcagctacgtcctgacgggcaccgagcaaggcatgacg
gaaacgttcggcaccacctgccacggagcgggccgggccctgtcccgggcaaagtcccgc
cggaacctggactttcaggacgttcttgacaagctggctgacatgggcatcgccatccgg
gtggcgtcacccaagctggtcatggaggaggctccggagtcgtacaaaaacgtgacggat
gtggtcaacacgtgtcacgacgccggcatcagcaggaaggccatcaagctacggcccatc
gccgtcatcaaaggctga
DBGET
integrated database retrieval system
