Oryzias latipes (Japanese medaka): 101164493
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Entry
101164493 CDS
T02443
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03030
DNA replication
ola03420
Nucleotide excision repair
ola03430
Mismatch repair
ola03440
Homologous recombination
ola03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101164493
03420 Nucleotide excision repair
101164493
03430 Mismatch repair
101164493
03440 Homologous recombination
101164493
03460 Fanconi anemia pathway
101164493
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ola03000
]
101164493
03032 DNA replication proteins [BR:
ola03032
]
101164493
03400 DNA repair and recombination proteins [BR:
ola03400
]
101164493
Transcription factors [BR:
ola03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
101164493
DNA replication proteins [BR:
ola03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
101164493
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
101164493
MMR (mismatch excision repair)
101164493
DSBR (double strand breaks repair)
HR (homologous recombination)
101164493
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
CDC24_OB3
IBR
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
101164493
NCBI-ProteinID:
XP_004076236
UniProt:
H2LE18
LinkDB
All DBs
Position
14:complement(9413875..9452592)
Genome browser
AA seq
655 aa
AA seq
DB search
MSITLTQGAIEALYKGLPIKNPLLQLLNIRQMTSNSGLPRFRLMMSDGQHALSSFLLTTQ
LNHLPEQKLLVQHCICMLKKVVTSTLADGRTAVTVMDMEVVQSAEETGGRIGNPTPYNRD
GQMSSPAKKSSATLEPDSSSATAPGPSYRSTSFSRSNAAQSSPTNSPMKVSPMKDTNSPM
KFSPAKDTNSPMKFSPAKDTNSPMKSSPAKDTNSPMKASSSSPMKVFPISTLNPYQSKWT
IRARVTNKSNVRQWSNSRGEGKLFSFEVVDESGEIKITAFNNEVDKFFSLLEQGKVYYIS
KATLKVANKQYSTLKNDYEMTLHAHSSIVPCEDNQSIPTMNCNFVQIEELENRDKDAIID
VIGICKKAEDVSRITTKNSREVSKRALHLIDSSGKEVTATLWGEEAEKFDGSGQPVVAIK
GARLSDFGGRSLSALFSSTIMVNPDIPEAFRLRAWYDREGYAVNSQSLTERRSTNSGSRM
NWKTLSDVKNENMGHEDKAEYFSCLATVVYMRKENCLYQACPSADCNKKVIIQHNGLYRC
EKCNREFSDFKYRFLLSANLADFGDNQWVTCFQETAEVLLGHSAQTLGQLRETDEAAFDE
VFQKANFRTHIFKNRVKLETYNDESRVKVTVMEVLPVDHREYSRRLLSNIRRLAC
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgtctataacattgacacaaggggcaattgaagccctttataaaggcttacctatcaag
aatcctctgcttcaactgctgaacatacgtcaaatgacgagtaactcaggtttacccagg
ttccggctcatgatgagtgacggtcagcacgctctgtcttcctttctgctcaccacccag
ttgaatcatctgccagaacagaagctgttggtccaacactgtatatgcatgctaaaaaag
gtggtaaccagtacattggcggatggcaggactgcggtgactgtgatggacatggaggta
gtgcagtcagcagaggaaactggaggaaggatcgggaatcctaccccttacaacagagat
ggtcaaatgtcctctccagcaaagaaatcatcagctactttagaaccagattcttcatct
gccacagcacccggaccctcatacagaagcacatctttcagcagaagtaatgctgctcag
agttctccgactaattcacctatgaaggtttcaccaatgaaagacacaaattcacccatg
aagttttcaccagcaaaagacacaaattcacccatgaagttttcaccagcaaaagacaca
aattcacccatgaagtcttcaccagcaaaagacacaaattcccccatgaaggcttccagc
agttctccaatgaaagtgtttcctatttcaacactcaatccctaccaaagcaagtggacc
atcagagcaagagttactaataagtccaatgtccgtcagtggagtaactccagaggagag
ggaaagctcttctcctttgaagttgtggatgagagtggggaaatcaagattactgccttc
aacaacgaagtggacaaatttttctctctactggagcaaggcaaggtgtattacatctca
aaggccacactgaaggtggcaaacaaacagtacagcacactaaagaacgactacgagatg
accctccatgctcattcatcaattgtgccgtgtgaggacaaccagagcatccccacgatg
aactgcaactttgtgcagatagaagagctggaaaaccgcgacaaagacgccatcatagat
gtaatcgggatttgcaaaaaagcggaggatgtgtcccgcatcaccaccaagaacagcaga
gaagtctccaagagggccctccacctgatcgactcatccggcaaggaggttacagccaca
ctgtggggggaagaggcggagaagtttgacggctcggggcagcctgttgttgccatcaaa
ggagctcgcttgtctgatttcggaggcagatctctctcagctctgttcagttcaacgatt
atggtcaacccagacataccagaagcctttaggctgagggcctggtatgaccgggaaggc
tatgctgtcaatagtcagtccctcacagagaggaggtcaaccaacagcgggtcaaggatg
aactggaaaacactgagcgacgttaagaacgaaaacatggggcatgaggataaggcggag
tatttcagctgtttggccacagtggtgtacatgcgtaaggagaattgtctgtaccaggcc
tgcccatctgcagactgcaacaaaaaggtcatcatccagcataatggcctgtaccgctgt
gagaagtgtaacagagagttttcagacttcaaatacagattcttactctccgccaacttg
gcagactttggggataaccagtgggtgacatgcttccaggagacagctgaggtcctgtta
ggtcacagtgcacagacgctgggacagctcagagaaacggatgaggctgcatttgatgaa
gtcttccagaaggccaacttcagaactcacatctttaaaaaccgagtcaagctggagacg
tacaacgatgaaagtcgagtgaaggtgacagtgatggaagtcctgccggttgaccacaga
gaatacagcaggaggcttctcagtaacattcgcagattggcttgctga
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