Oryzias latipes (Japanese medaka): 101164692
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Entry
101164692 CDS
T02443
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101164692 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101164692 (hbs1l)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101164692 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
101164692
NCBI-ProteinID:
XP_023808605
UniProt:
H2MPR7
LinkDB
All DBs
Position
24:complement(14274914..14297248)
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AA seq
701 aa
AA seq
DB search
MSRHRNVRGYNYQEDFEDDDIYGQSVEEYDCISPATANQFLYSRQQRQVSKEEPLEEEGY
EAEDVLSPTIDPSLDPLDQAKLYSCLDYMRTVLGEAVPESVLTQAAIKHGFDPQRALDAV
LSEDTKPAPVLKSADEEMSSATWLSEEKAPLPQRTKRESTADRAKGRDVSQYHLDSEVVP
KVARMTVSGKKQTMGFEVPSTGENSIFTSSVHRVGSPENITSTTSPEIAPKRPDTPSKAS
NGDELSAVPTPSRSSGKARQAVNIKAELEKRQGGKALLNLVVIGHVDAGKSTLMGHLLYL
LGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERDRGVTMDVGMTKFETNTKVVTLM
DAPGHRDFIPNMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREHALLVRSLGVTQLAV
AVNKMDQVNWQQERFQEIISKLGHFLKQAGFKESDVFYIPTSGLSGENLTVRSSVLELTR
WYSGPSLLEQIDAFKPPQRSVDKPFRLSVSDVFKDQGSGFCVTGKIEAGYIQTGDRILAI
PPNETCTVKGITLHDEALDWAVAGDHISLTLTGMDIIKMNVGCVFCDPKEPIRVCTRFKA
RILLFNIEVPITKGFPVLLHYQTVSEQATIRKLISVLHKTSSEVLNKKPKCLTKGMNAIV
EIQTQRPVPLELYKDYKELGRFMLRYVGSTIAAGVVTEIKE
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggcacagaaatgtgcggggttacaactaccaagaagactttgaggatgatgat
atatatggacagtctgttgaagagtatgactgtatatcaccagctacagcaaatcagttc
ctgtactcacgtcaacagaggcaagtatctaaagaagaacctctagaggaggaaggatat
gaagctgaagatgttctgtcaccaaccatcgatcccagtctggaccccttggaccaagcc
aagctgtattcctgccttgactatatgcggactgtgttgggtgaagcagtgccagagtcg
gtcctcacccaggcagccataaaacatggatttgacccacagagagcactggatgctgta
ctgtcggaggacaccaaaccagctccagttctcaaaagtgcagatgaagaaatgtcctca
gcaacctggttgagtgaggagaaggcgccacttccacaaagaaccaaaagggagagtacg
gcagatagagccaaaggcagagatgtgtctcagtaccatttggactctgaggtggttcct
aaagtggcccggatgactgtctctggcaagaagcagaccatgggctttgaggtccccagc
acaggggagaacagcatcttcacttcttcagtacatcgtgttggcagccctgaaaacatc
acctcaactacctcccctgaaattgcacctaaacgtccagatactccttctaaggcatcc
aacggagacgagctctcagctgttcctacaccaagtcgctcttccggaaaggcccgacag
gccgtcaacatcaaggcagagctggagaagagacaagggggcaaagcccttttaaatctg
gtagttataggtcatgtagatgcaggtaagagcacactgatgggccacctgctttatctg
ctcggcaacgtcaacaagcgcaccatgcacaagtatgagcaggaatcaaaaaaggcggga
aaagcctccttcgcttacgcctgggtcctggatgaaactggcgaggagagagacagaggg
gtgaccatggacgtgggcatgacaaagtttgagacaaacactaaggtggtgactctgatg
gacgcaccaggacacagagacttcatccccaacatgatcacaggagctgcacaggcggac
gtggccgttctggtggttgatgccagcagaggagagtttgaggcaggcttcgaggccggc
ggtcaaaccagagagcacgctctcctggtgcgatctctcggcgtcactcagctggctgta
gccgtcaacaagatggaccaggtaaactggcaacaagagcgtttccaagaaatcatctca
aaactcggccattttctaaagcaggctggattcaaggaatccgatgttttctacatccca
accagcggcttgtcaggagaaaacctcaccgtcaggagttcagtgttggagctcacccgt
tggtattctggacccagcctgctggagcagatcgatgcattcaaaccccctcagagatct
gtagataaacctttcagactgtctgtctccgatgtgttcaaagatcagggttcaggcttt
tgtgtcaccggaaagatcgaagctggttatattcaaacgggagacagaatactggcaata
cctcccaatgaaacctgcacagtgaaaggaatcactctacatgatgaagctctggactgg
gcggtagctggagaccacatcagccttacactcactggaatggacatcatcaagatgaat
gttggctgcgttttctgtgaccccaaggagcccattcgagtctgcactcgattcaaagcc
agaatcctccttttcaatatcgaggttcccatcacaaaaggctttccagtactgttgcac
taccagacagtcagcgagcaagccaccattagaaaactaataagtgtcctacataagacc
agcagcgaagtcctcaataagaaaccaaagtgtttgacgaagggtatgaatgccattgtg
gagatccagacccagaggccggtgccgttagagctgtacaaggactacaaagaactgggg
cgcttcatgctgcgatatgtgggctccaccattgctgcaggagttgttacagagatcaag
gaatga
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