Oryzias latipes (Japanese medaka): 101164811
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Entry
101164811 CDS
T02443
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5 isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03030
DNA replication
ola03410
Base excision repair
ola03420
Nucleotide excision repair
ola03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101164811 (rfc5)
03410 Base excision repair
101164811 (rfc5)
03420 Nucleotide excision repair
101164811 (rfc5)
03430 Mismatch repair
101164811 (rfc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ola03032
]
101164811 (rfc5)
03036 Chromosome and associated proteins [BR:
ola03036
]
101164811 (rfc5)
03400 DNA repair and recombination proteins [BR:
ola03400
]
101164811 (rfc5)
DNA replication proteins [BR:
ola03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
101164811 (rfc5)
DNA Replication Termination Factors
ELG1-RFC complex
101164811 (rfc5)
Chromosome and associated proteins [BR:
ola03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
101164811 (rfc5)
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
101164811 (rfc5)
Check point factors
HRAD17(Rad24)-RFC complex
101164811 (rfc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_16
AAA_22
AAA_24
AAA_11
AAA_14
RuvB_N
AAA_assoc_2
DUF815
DEAD
ResIII
ATPase_2
AAA_5
TIP49
PhoH
AAA_19
AAA_30
AAA_7
TniB
nSTAND3
AAA_25
Mg_chelatase
Thioredoxin_6
bpMoxR
Glyco_hydro_57
AAA_3
DUF4119
Motif
Other DBs
NCBI-GeneID:
101164811
NCBI-ProteinID:
XP_023813987
LinkDB
All DBs
Position
9:3443501..3447590
Genome browser
AA seq
381 aa
AA seq
DB search
MASTSRTPLQSRNLPWVEKYRPQKLDDLISHRDILSTIQRFVREDRLPHLLLYGPPGTGK
TSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSADQMIPRL
RHVIQEESIDITEDGMKAIVTLSSGDMRRSLNVLQSTSMAYGKVTEDSVYTCTGQPLRSD
IANILDWCLNKDFTSAYKQILQLKTLKGLALHDILTELHLLVHRGNPAEILPLPSWREDF
FFLSSSQFHVLVLHPKASISSETFSSSSAEVDFPPATRMTLLVKLADVEHRLASGTDEKI
QLSSMVGAFQEVRDLVVSEAS
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctacgagtaggaccccgttacagagcagaaacctgccatgggtagaaaaatat
agaccacaaaaactcgatgatttaatttcacacagagacatcctgagcaccatccagagg
ttcgtcagagaggaccggcttcctcacctcctgctctacgggcctcctggaaccggaaag
acctccaccattctggcctgtgcccggcaactgtacaaggacaaggagttcaactccatg
gtgctggagctgaatgcttcagacgacaggggtatcgatgtggtccgaggtcccatcctg
agttttgccagcaccagaaccatcttcaagaaaggcttcaagctggtgatcctggacgag
gccgatgccatgacccaggatgcccagaatgcattgcggcgagtgattgagaagttcaca
gaaaacacccggttctgcctcatctgcaactacctttccaagatcatccccgccctgcag
tcccggtgcaccaggttccgcttcgggcctctgtcggcggaccagatgatcccccggctg
aggcacgtcattcaggaggagagcatcgacatcaccgaggatgggatgaaggccatcgtg
actttatcgtccggcgacatgaggaggtcgctgaacgtcctgcagagcaccagcatggcg
tacgggaaggtgacggaggactccgtgtacacctgcacgggacagccgctccgctcggac
atcgctaacatcctcgactggtgcctcaacaaagacttcacctcggcttacaaacaaatc
ctccagctgaaaactttgaagggtctggctcttcatgacatcctcaccgagctgcacctg
ctcgttcacagaggtaatccagcagaaatactcccattaccatcgtggagggaggatttt
ttttttttatcctcctcacagtttcacgtcttagttttacatcctaaagcaagcatctcc
tctgaaacgttttcctcttcctctgctgaagtggattttcctcctgctacccgcatgact
ctgctggtgaagttagccgacgtggaacacagactcgcttcgggaacggacgagaagatc
cagctgagctccatggtgggggctttccaggaggtccgggacctggtggtcagcgaggct
tcatga
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