Oryzias latipes (Japanese medaka): 101165025
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Entry
101165025 CDS
T02443
Symbol
taf1b
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit B
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ola03021
]
101165025 (taf1b)
Transcription machinery [BR:
ola03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
101165025 (taf1b)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Rrn7_cyclin_C
Zn_ribbon_RRN7
Rrn7_cyclin_N
DUF5816
Motif
Other DBs
NCBI-GeneID:
101165025
NCBI-ProteinID:
XP_023808948
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Position
24:complement(22298188..22306398)
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AA seq
575 aa
AA seq
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MDEEETAGYAEPCAQCAAVDWGLSEEGRFFCKSCHNVIERTKEVMDLTFIQGANRISTLG
RKSKTETAGGRHTWMVCEGFQFILMNQADALLRLGVHPHFKDGVLRQLWRLYLQKSRQAY
CVNRVRSAKFRVGDADSDSDSAAEASVASASGTDGESNPCSSPSSKGGSDWSGSADSLCY
LTPRQRRSHRLLSLKKTLALIHLALVWSREALTLSDLLGLVNCGSVPYVKAHEQLPEQMK
LFGKDALLFTAETVPSHRSLHKEAQDLLLFLQLPAFPPISQQTLLHPGPLSLRYLIDANL
PGELHRWVCRVAELAGLFHESRQTFHPESQPTLPRYDLQAAALIIVTMKLLFGLDDHTEW
ELSNNARSTDGEGAQFNLRRWYKLMQTALNRAQQRRDQDTARRQWRAKKPIFMRKKEKWW
IMKKKRVAEQLQICFEKLSSQPSGPKDVTTSSFKFCWGEQKGADGPSLHHTLLDGVVGLK
DDLLTPHHHSYWHSSLRPCKPRCQNHFTDLKNTLPNSFVWLLELFCFILDVKPSCLYEEV
LSVERRVFAPPTDRARLRNRTETRTRHSAQTSEES
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaagaaacggcgggttacgcggagccgtgcgcccagtgcgcagccgtggac
tggggtctctcagaggagggtcgcttcttctgcaagtcctgccacaatgtcatcgagcga
accaaagaggtgatggacctcaccttcatccagggagccaacaggatctccaccctcggc
agaaaatccaaaaccgagacagcaggtggccgtcacacatggatggtctgtgaaggtttc
cagttcatcctgatgaaccaggcggatgccctgcttaggctgggagtccatcctcacttc
aaggacggcgtgctgcgtcagctgtggaggctctacttgcagaagagccggcaggcttac
tgcgtcaaccgagttaggagcgccaagttcagagtgggagacgcagactcggattcagac
agcgcagccgaggcgtctgtggcatcagccagcgggacggatggagagtcaaatccctgc
agcagccccagctctaaaggaggcagtgactggtctggatcagcggacagcctctgttac
ctgactccccgtcagaggcggagccatagactcctgagcctgaagaagactctggccctg
atccacttggccttggtctggagccgggaggcgctgactctcagcgacctgcttggactg
gtgaactgtggaagcgtcccgtatgtgaaggcccatgagcagctcccagagcagatgaag
ctgttcggcaaagatgctcttctgtttactgcagagacggtaccgtctcaccgctcgctg
cataaggaggctcaggatctgcttctgttcctgcaacttccagcgtttcctcccatcagc
cagcagactctgctccacccggggccactgagcctgcgctacctgatcgatgcaaacctg
cccggtgagctgcacaggtgggtctgcagagtggcggagctcgcaggtttgttccatgaa
agccgccagacgttccaccccgagtcccagcccaccctgccccggtacgacctgcaggcg
gcagcgctcattatcgtcaccatgaagctcctctttggcctggacgaccacaccgaatgg
gagctgtccaacaacgccaggtccacagacggagagggggcccagtttaacctgcgaagg
tggtacaaactgatgcagaccgctctgaaccgagctcagcagaggagggaccaggacaca
gccaggaggcagtggagagctaagaaacccattttcatgaggaagaaggagaaatggtgg
atcatgaagaagaaacgagtcgcagagcagctgcagatttgctttgagaagctttcctct
cagcctagtggccctaaagatgtcaccacctccagcttcaagttctgttggggggaacag
aagggagccgacggtcccagtcttcaccacacgctgctggatggagtggtggggctcaaa
gatgaccttctgaccccccaccaccactcatactggcattcgtcgctcagaccctgcaaa
cccagatgccaaaaccacttcacggatttgaaaaacacgctgccgaactccttcgtttgg
ctgctggaactgttctgcttcattctggacgtgaagcccagctgcctgtacgaagaggtc
ctgagtgtggagagacgggtgtttgcgccccccacggacagagcgcggttaaggaacagg
actgaaaccaggaccagacattcggctcagacctctgaagaaagttaa
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