Oryzias latipes (Japanese medaka): 101165823
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Entry
101165823 CDS
T02443
Symbol
ctdp1
Name
(RefSeq) RNA polymerase II subunit A C-terminal domain phosphatase
KO
K15732
RNA polymerase II subunit A C-terminal domain phosphatase [EC:
3.1.3.16
]
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ola01009
]
101165823 (ctdp1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ola03021
]
101165823 (ctdp1)
Enzymes [BR:
ola01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
101165823 (ctdp1)
Protein phosphatases and associated proteins [BR:
ola01009
]
HAD phosphatases
Fcp/Scp phosphatases
101165823 (ctdp1)
Transcription machinery [BR:
ola03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
101165823 (ctdp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FCP1_C
BSH_Fcp1
NIF
BRCT
Biotin_lipoyl
PTCB-BRCT
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
101165823
NCBI-ProteinID:
XP_023815984
UniProt:
H2MEM1
LinkDB
All DBs
Position
11:25068931..25126218
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AA seq
948 aa
AA seq
DB search
MEDPPVGSGGASAEGPAAQVADMCWPTEALPLRLLEWKVKPGTLVNVDSVIALCAVVPRE
EAAEGVRPSEKKVKSNRAGVVKELCCQTGHIIPPGGVIVRIEECSHPVVMKGLCAECGQD
LTQLQGTNGNQHTPISTATVSMVHSVPELMVSSEQAEQLGREDQQRLHRNRKLVLMVDLD
QTLIHTTEQHCQQMSNKGIFHFQLGRGEPMLHTRLRPHCKEFLEKTAKLYELHVFTFGSR
LYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRYLFPCGDSMVCIIDDREDVWKF
APNLITVKKYVYFQGAGDINAPPGSREALAASKGGPFCRPGENAEQPGAEEQNNGLKKRV
KEQRDDCSSSRGSQGDAVSERTALTSIEEEDKGGHKGSEPEAVSLVEEKEPQRADNADME
DGGRTAEPQDAPSCPNHLDFNLSSDSDSETETPQSTDKDLEQKSCQTKASSQESEEQDPS
DGNAPTSRDLEKSPEPSGVVLPEPELGNGCLDKREPETESQNSEQSGVTVGEELLDQSME
DEEEEADNDHDDHLIYLEEVLERIHAEYYARYEAYLRKETAQMPDIRKIVPELKSKTLED
ATIVFSGLYPTNYPMDRTREYYHAKALGAKVSRNLILNPQDPGRTTHLIAARAGTEKVRQ
GQGYKHLHVVNPDWLWSCLERWERVDEQLYPLKDDYSKTPRSNSPAAFAESQGSTQKPAF
QPTPIQPRPPPPAPESRTYDPVTGKLIRRGPNVQRPPSYLHPSSSEPRDQPSLRAAAPTP
LKEAAGCVQDGEQAGPSRRRRQPSMSETMPLYTLCKEDLESMDREVDDILGEESDNESEG
RGRERPRSEETKAEEERRPPPAGHRLGWGVSPQSAEEKPLTASSSDGPSRNVSRGHKRKL
EEEEAKTRQKDGSSSDESSKDSNEEEEGSSSEADEMAAALEAELHDFM
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggaggaccctcccgtgggttctggcggcgcatcagcggagggccccgcggcgcaggtg
gcggatatgtgctggccgaccgaagcgcttcctttgcggctgctggagtggaaagtgaag
cccgggacactggtgaacgtggactccgtgatagcgctgtgcgcggtcgtgccccgggag
gaggcggcggagggcgtccggccatcagagaagaaggtgaagtcgaaccgtgcaggagtg
gtgaaggagctctgctgccagaccggacacatcattcctccggggggtgtcattgtcaga
atcgaagaatgcagccaccctgttgtcatgaagggtttatgcgccgaatgtggccaggat
ttgactcagcttcaggggacaaacggaaaccagcacacccccatctccacggcaaccgtc
tccatggtgcacagtgtccctgaactgatggtcagctctgagcaagccgagcagctgggc
agagaggaccagcagaggctgcaccggaacaggaagctggtcctcatggtggatctggac
cagacgctcatccacaccacagagcagcactgccagcagatgtccaacaagggcattttc
cacttccagctgggccggggcgagcccatgctgcacacccgcctgcgcccccactgcaag
gaattcctggagaaaacggccaaactctacgagctgcacgtcttcacgttcgggagccgc
ctctatgcacacactattgctggttttctggatcccgaaaagaagcttttctcccacaga
atcctttctagagatgaatgcatcgatccgttctccaagacgggaaacctaaggtacctt
ttcccctgtggggactccatggtctgcatcatcgatgaccgcgaagacgtttggaagttt
gctccgaacctcatcaccgtgaaaaagtacgtctacttccagggagccggagacatcaac
gcccccccgggatctcgggaagcgctggcggccagtaaaggcggaccgttctgcagacca
ggagagaacgcagagcaacccggagccgaggagcagaataacggtctgaagaaacgggtc
aaggagcagagggacgactgcagctcctctcgtggttctcagggagacgcagtgagcgag
cggacagccctaaccagcattgaggaggaggacaaaggaggacataaggggtcagaaccg
gaggctgtgagtttagtggaggagaaggagcctcagagggctgacaatgcagacatggag
gatggaggcaggacagctgaaccacaggacgctcccagctgccccaatcacctggacttc
aacctttctagtgacagtgactctgaaacggagacgccgcaatcaaccgacaaggacttg
gaacaaaagtcctgccagacaaaggcatccagtcaggaatcagaggagcaagacccttct
gatgggaacgctccaaccagcagagacctggagaaaagccctgaaccctcaggggtcgta
cttcccgaacccgagctcggaaacggatgtctggacaagagagagcccgagacggagtcc
cagaacagtgaacagtctggagtcaccgtgggggaggagctgctggaccagagcatggaa
gatgaggaggaggaagctgacaatgaccacgacgatcacctaatctacctggaggaggtg
ctggaaaggatccacgcggagtattacgcccgctacgaggcttacctgagaaaggagacc
gcccagatgccggatatccgtaagattgttccggagctgaagagcaagactctggaggac
gccaccatagtgttcagtggtctgtaccccaccaactaccccatggacaggacgcgtgag
tactaccacgccaaagctctgggggccaaggtcagcaggaatttaatcctcaatcctcaa
gatccaggccggacgacgcacctgatcgcagcaagagcaggtacagagaaggtccgacag
gggcagggctacaagcaccttcatgtggtcaaccccgactggctgtggagctgtctggag
cgctgggagagggtggatgagcagctgtaccctctgaaggacgactactcaaagacgccc
aggagcaacagcccagcagcgtttgctgaaagtcagggctccacacagaagccggccttc
caacccacccccatccagcccagacccccaccgccagccccagagtcccggacgtatgac
cccgtaacaggaaagctcatccgcagaggccccaacgttcagcgccctccatcctacttg
cacccatcaagttctgaaccccgagatcagcccagcctcagggcggctgcacccactccg
ctaaaggaggcagcgggatgcgttcaggacggcgagcaggcggggccatcgcggcgcaga
cggcagcccagcatgtcagaaaccatgcccctgtacacgctctgcaaggaagacctggag
agcatggacagagaggtggacgacatcttaggtgaggagagcgacaacgagagcgagggc
cgcgggagggagaggccgaggagcgaggagacgaaggctgaggaggagcgcagaccgccc
ccagctggacaccggcttggatggggggtcagtccacagagtgcggaggagaagcccctc
acagcatccagcagtgacggtccatcccgtaatgtctccaggggccacaaacggaagctg
gaagaagaggaggcgaagacgaggcagaaagacgggagctcctctgacgaatcctctaag
gactccaacgaggaagaggaaggcagcagctcggaggcagacgagatggccgcggctctg
gaggcagagctgcatgactttatgtga
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