Oryzias latipes (Japanese medaka): 101165926
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Entry
101165926 CDS
T02443
Symbol
ptbp1
Name
(RefSeq) polypyrimidine tract-binding protein 1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101165926 (ptbp1)
03041 Spliceosome [BR:
ola03041
]
101165926 (ptbp1)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
101165926 (ptbp1)
Spliceosome [BR:
ola03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
101165926 (ptbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
101165926
NCBI-ProteinID:
NP_001274472
UniProt:
U6C5P8
A0A3P9LGR1
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All DBs
Position
22:complement(5061001..5074706)
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AA seq
577 aa
AA seq
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MDGRLDATELYPLGSGYVPEIESVHDISVGTKRGSDELFSSCITNGPYIMNSANGNDSKK
FKGDVRSPGVPSRVVHVRKLPNDINEAEVISLGLPFGKVTNLLMLKGKNQAFLEFGSEEC
AQTMVSYYSSVTPVIRNHPIYMQYSTHKELKTDNSPNQVRAQAALQAVNALHGSGMGSMA
ISAEAASMGGAASQSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALI
QYADAMTAQHAKLSLDGQNIYNACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTADSQ
PSLDHQAMAAAAFGPGIISASPYGGAHAFPPTFTFQQAGLSMQGIPSALASLGVGHSGMA
AAAAAAAATRLGLSGLGATGGHNVLLVSNLNPESVTPHCLFILFGVYGDVMRVKILFNKK
ENALVQMSDGTQAQLSMSHLNGQRLHGRAIRVTLSKHTTVQLPREGHEDQGLTKDYSNSP
LHRFKKPGSKNYSNIFPPSATLHLSNIPPSVMEDDLRRLFASTGATVKAFKFFQKDRKMA
LIQMGSVEEAIECLIEFHNHDLGENHHLRVSFSKSTI
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggacggccgcctagacgccactgagttgtaccccctgggatccggctacgtccctgaa
atcgaaagtgtccatgacatatcggttggcacaaagaggggatccgacgaactcttttct
tcctgcataacaaacggaccctatatcatgaactcagccaatggcaacgacagcaaaaaa
ttcaaaggtgacgtccgcagccctggtgtgccctcacgtgttgtccatgttcgcaagctg
cccaacgacatcaatgaggcggaggtgataagcctgggactgccttttgggaaagtcacc
aatctgctcatgttgaaaggaaaaaaccaggcattcttggagtttggtagtgaggagtgt
gctcagacgatggtgagctactactcctccgtcacccctgtcatcaggaaccaccccatt
tacatgcagtactccacccataaggaactcaagacagacaactctcctaaccaagtgcgt
gctcaagcagctctgcaggcagtcaatgccctccatggaagtgggatgggaagcatggcc
atttctgcagaagctgctagcatgggaggagcagccagccagagtcctgtgctcagagtt
attgttgagaacctcttctacccggtgaccctggatgtgctgcaccagatcttttcaaag
tttggtactgtgttgaagatcatcactttcaccaagaacaaccagtttcaggctctgatt
cagtacgctgacgccatgactgctcagcacgctaaactgtcactggacggccagaacatc
tacaatgcttgttgtaccctgagaatcagcttctccaagctcaccagcctcaacgtcaaa
tacaacaatgacaaaagcagggattacacccgcccagaccttcccactgccgactcgcag
ccctctcttgaccaccaggcgatggcagctgctgcgtttgggccaggaataatctcagcc
tcgccctacggtggagctcatgctttcccccccacctttactttccagcaagcaggtctg
tctatgcagggcattcccagtgctctagcatccctgggtgtgggacactctggcatggcg
gctgctgcagctgcagcagcagctaccagacttggcctgtcaggacttggtgctacaggg
ggacacaacgtcttactggtcagcaatctgaaccctgagagcgttacgccacactgcctc
tttattcttttcggtgtgtacggcgatgtgatgagagtcaagatcctgttcaacaaaaag
gaaaatgctttggtccagatgtctgatggcacgcaggctcaactctccatgagccacctg
aatggccagcgtcttcacggcagagcgattcgcgtgactttgtcaaagcacacaacagtg
cagctgcccagagaaggtcatgaggaccagggcctcaccaaggattacagcaactccccc
ctgcatcgcttcaagaagcctggctccaaaaactactccaacatcttcccaccctctgcg
acgctccacctctccaacatcccgccttctgtgatggaggacgacctcaggaggctattc
gccagcacaggagccacagtcaaggccttcaagttctttcagaaggaccgcaagatggct
ctgatccagatgggctcggtggaggaggccatcgagtgcctcatcgagttccacaaccac
gacctgggggagaaccatcatcttcgagtgtccttctccaagtccaccatctga
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