Oryzias latipes (Japanese medaka): 101166103
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Entry
101166103 CDS
T02443
Symbol
cnot6l
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101166103 (cnot6l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101166103 (cnot6l)
Enzymes [BR:
ola01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
101166103 (cnot6l)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101166103 (cnot6l)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101166103 (cnot6l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_14
LRR_4
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
LRR_9
type_II_gspD_N0
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
101166103
NCBI-ProteinID:
XP_023814676
UniProt:
H2MXA5
LinkDB
All DBs
Position
9:33020836..33043021
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AA seq
548 aa
AA seq
DB search
MPKEKYDPPDPRRCYTIMSAEEAASGKKAHWAELEISGRVRSLSSSLWELTHLTALHIND
NNLTRIPPDIAKLPNLVYLNLSSNKLRSLPSELGNMVSLRELLLNNNLLRVLPYELGRLF
QLQNLGLKGNPLSQDVLNLYQEPDGTRKLLNYMLDNLAVHPEQLPQRPWVTVKEQDHLSP
SAVFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEITNWDADIISLQEVETEQ
YYTFFLESLKGRGYDGYFCPKSRAKLVSEQERKHVDGCAVFFKTQKFTLVQKHTVEFNQV
AMANSEGSEVMLNRVMTKDNIGVAVLLEVNRDLFSGGLKSPQEKQLLLVANAHMHWDPEY
SDVKLIQTMMFLSELKSIAERACSSLTSDPSAIPIVLCADLNSLPDSGVVEYLSNGGVAE
NHKDFKELRYNECLTNFNCNGKNGNSDGSITHSFQLKSAYDSSLMPYTNYTYDFKGVIDY
IFFSRTHMSVLGLLGPLDNHWLMDNNIIGCPHPHIPSDHFSLLAQLELHPPPPHPPNPIN
GLHLPIHR
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggaaaaatatgatcctccagatccccgcagatgttacaccatcatgtcagct
gaggaggcggccagcggaaagaaggctcactgggctgagctggagatttctgggcgggtg
aggagcctgagcagctctctttgggagctgacccacctgacggcgctacacatcaacgac
aacaacctgacgcgcatcccgcccgacatcgccaagctgcccaacctggtctacctgaac
ctgtcgtccaataagctccgcagtctgccctcggaactgggcaacatggtttctctcagg
gaattactcttaaacaacaatcttttacgagttctgccttatgagctggggaggcttttc
cagctgcaaaatctcggcctcaaagggaatcctctgtcccaggacgtcctgaacctctac
caggagcctgacggaaccaggaagcttctgaactacatgctggacaatctcgcagttcac
cctgagcagcttcctcaaagaccctgggtcaccgtgaaggaacaagaccacctgagcccc
tcagctgtgttcacagtcatgtgctacaatgtgctgtgtgacaaatatgccacaaggcag
ctgtacgggtactgcccctcctgggccttgaactgggagtacaggaagaaaggcatcatg
gaggaaatcaccaactgggatgcagacatcatcagcctgcaggaggtggagactgagcag
tactataccttcttcctggaaagtctgaaggggcgtggctatgacggttacttctgtccc
aaatctcgtgccaaactggtgtctgaacaggagcggaagcacgtggacggctgcgctgtg
ttctttaagacgcagaagtttactctggttcaaaaacacactgtggagttcaaccaagtg
gccatggccaactctgagggctccgaggtcatgctgaaccgcgtgatgaccaaagacaac
atcggagtggctgttctgctggaggtcaacagagacctgttctctggcggcttgaagtcg
ccacaggagaagcagctgcttctggtggccaacgcccacatgcactgggacccggagtac
tcggacgtgaagctgatacagaccatgatgtttttatcggagctgaagagtatcgctgag
agggcctgtagctccctgacctctgacccgtccgccatccccatcgtcctctgtgctgac
ctcaactcgctgcctgactctggtgtggtggaatacctcagcaatggcggtgtggctgag
aaccacaaggactttaaggagctgcgctacaatgaatgtttgaccaacttcaactgcaac
ggcaagaacggcaactcagacgggagcatcacgcacagcttccagctgaagagtgcctat
gacagcagcctcatgccttacaccaactacacctacgacttcaagggtgtcatcgactac
atcttcttctctcggacacacatgagcgtgctcggcctgctgggaccgctcgacaaccat
tggctgatggacaacaacataattggctgcccccacccccacatcccatcggaccacttc
tccctcctggcccagctggagctgcaccccccacccccccatccccccaaccccatcaat
gggctgcacctgccgatccacaggtag
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