Oryzias latipes (Japanese medaka): 101166223
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Entry
101166223 CDS
T02443
Symbol
nlrc5
Name
(RefSeq) protein NLRC5 isoform X1
KO
K22615
NLR family CARD domain containing 5
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ola04054
]
101166223 (nlrc5)
Pattern recognition receptors [BR:
ola04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
101166223 (nlrc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
Atypical_Card
NOD2_WH
Gag_p30
AAA_30
ARM_KDM8_N
ABC_tran
Endonuc-BglII
DUF6274
Motif
Other DBs
NCBI-GeneID:
101166223
NCBI-ProteinID:
XP_011474651
LinkDB
All DBs
Position
6:24918112..24950636
Genome browser
AA seq
1905 aa
AA seq
DB search
MDDESNLQDKDVNAVLAQESSKLCHILSNQSQSVIMLLYQRMVNDDGWQNKQASSSSNAG
SSADLVKALLDYYRSANAAKCRNFLQSVCMLCEDIPMHLEARLMSVACSGCDGALSTEEE
PIKRPRIDYWEEYVLEGRNLLLSRWKRLTDRLVKAVELDRVWVNFRNVNRGRDRPDQTPA
SADRGFNSAEPDGDYGFSESKVTMETFLRGCKGKVTFLVGQAGSGKTLLMSCLGQQWANG
LGPFPASYLLVFLEFRQLNQLSRSLSLSELLFQHYLPSNRGSNAEKAIVDCLLSNPEKSC
WVLDGYDEFLWKIKKHRMPRDVLNLEEPLPVADLISGLLTRQLLPGSTVVVTCRARDIVD
FYNLSDKVGELLEWDQNEIKEYVHHFFGVEDRAIGVEATKLLLSSQHLLAMSSLPALCNI
CCICLKHLLLKDRNASYRSAEDEQRGKSTKKTPQTKEMDTQVVEKDKGTDREENETENAQ
HSGEREGSQDLTMRTANGEFNFSASSARVPSTLTQVYLTAVAAFLSRLPDQGGGDNRPKA
ARSSLSNTDSMLSTFVQYPSELWELSQVAWKGVEEGKILFMKEDVPETILQLLVKSGLFS
QVELRCHDGTLVNAYSFIHLTVQEFLAALRIMTSHKVSDAQLKKRFSLKTRWTTKSDQKT
PFTDSLYLYVCGLASPNCTQVLVEVARASGVKGVQNWVQKRQDLVLRLLRPLCHSNTLTG
PKLLQLCNCIQESQDYELAQQALRARPTLELRNFRLVPNDIDALAFVVNSAADQAVGLDF
GACSMEPECLDALSRCQCIHFLSFHSRKYNDKFAEKLSCILPGFPNLRKLEFSGASLTAA
GAKSLASGLQKCCNITEINLSDNNLQDDGFGHVVELFTKLPNLSSVKLGRNNSSLQALNC
IVEKMGSCLNILQVYADGVKEVVVTFSKESDGNSQKTKPEPTISLLNQKWNKLEMQNLVK
SLVNCPALSVLDLSGGCWDDETLKAFTYFVPKLKICRKIVLDDSCSSVESLVMLVALLSD
CPLVIGLNIRLQNPVQASLVFAGGTENPSSEISKTLCLSCCKLVPAHLERVWQSLRTTSG
LTQLNLSSNCLGDKGLKKLLDILPHLDKIQEINASNNDLSMEGAVMLAGALCSHNHLTQV
QISHEGKGQVILQFNPEKSEIKQQTKTFRILNSSLSTSVIAKVCSMLVNCVFHLDLEFSF
CSFAEKALKMMLRMLPRMSSLQKLGVECSITSTKDALTLVSCLKDNNRVTSVDLSPQGES
FIKFGCMKTEHVIFRLSHFFFREENIQMLLQILQQGVQLSYLDLSGNQLGDAGVKSLVDF
LPNLQISCFVNVSNNGLSQQGLLDVVSTLHSSSDASAVEVSLSEDERCLIRFEEGNHEKS
LSVRNCSLQRDHLIRLAEIVSNCPSLSKIEFENNLLQSEWIEGFFNMFQPRQTACSVSFE
ESWFKAEQAVDLLRHCLEIKTNIQTIRIHHKTLHLTMKETFALTSASLVDRAAAVEQKAS
MCSTTQRFPSLKELDFSLDILDIEEHQFLCSLLPLLPNLTSLSVAMKVGSVSVVEELSQV
ISQSSSIQCLNLSGHVINDTAAHSMAAFLPRLRSISLSHCVWSPAAELQVIEALQQSITL
QSLCLDCVQLSDGGWTALAQVLKNSNSMRCLRLDEIGKAAGQTEADRMLDLLTVMEGNKQ
IEEIGLDGWRMSEGGIQQLTHFLPDWKELKIICLSKNFMGDTAGERLLDALKSCIHMREL
HLSSNDLGDLTAARMSLVLPSLTHLTVLDISENHLGRDGAAALSTAIRSLKKLTQINLTS
VGTSELSLVAASLAECPLIQDVGLGWNRCGDDVALQLSGLLPFCPKLVRIDLECNLIGVS
GVETLVKASWTCPSLQVIRLWKNRVPLNEQQRLMLKDRRLTFSST
NT seq
5718 nt
NT seq
+upstream
nt +downstream
nt
atggatgatgagtctaaccttcaagataaagatgtgaacgctgtcttggcccaggaatct
tcaaagttgtgtcacattttgagcaatcagtcacaatctgtcataatgttgctttatcaa
aggatggtaaatgacgatggatggcaaaacaagcaagcctcctccagctccaatgcaggg
tcttcagcagaccttgttaaagcattgttggattactacaggtcagccaatgctgcaaag
tgtcgcaactttctgcagagtgtttgcatgttgtgtgaagacatacccatgcatctggag
gccaggctcatgtcagtggcatgcagtggttgtgacggagcactatctacagaggaggag
cccatcaaacgcccacggattgattactgggaagagtatgttttagaagggaggaattta
ctgctaagtcgctggaaaagactgacagaccgcctggtgaaggctgtggagctggacaga
gtgtgggtcaacttcagaaatgtaaacaggggcagggaccgacctgatcagacccctgct
tcagcagacagagggttcaactctgcagagcctgatggagattatgggttttcggagtcc
aaagtgactatggaaaccttcttacgaggatgtaaaggaaaagtgacatttcttgttggc
caggctggctcaggaaaaactcttttaatgtcttgtttaggacaacagtgggcaaatggt
ctgggcccattcccagcatcctacttgttagtttttttggaatttcgtcagctgaaccag
ctgtcccgctccctgtcactgtctgagctgctatttcagcactacctcccttcaaatcga
ggcagcaatgcagagaaagccattgtggactgccttctttccaatccggagaagagctgt
tgggtgttggatggctacgatgaatttctttggaaaatcaaaaaacaccgaatgccacgt
gatgtgttaaacttagaggaacctctgccagttgctgacctgatctcagggttgttgact
cggcagcttcttccaggaagcaccgtggtggtgacttgtcgtgcacgggacattgtagat
ttctacaacttgtcagacaaggttggagagctgcttgagtgggatcaaaatgaaatcaag
gagtatgtgcaccacttctttggggttgaagacagagccattggagttgaggcaaccaaa
cttcttctctccagtcaacatctccttgcaatgtcatctctcccagccctctgtaacatc
tgctgcatctgtctgaagcatttactgctcaaagacagaaatgccagttataggtcagca
gaagatgaacaaagaggaaaatctacaaaaaaaacaccgcaaaccaaagagatggatacg
caggttgttgaaaaagacaaagggacagatagagaagaaaatgaaactgaaaatgctcaa
cacagtggagaaagagaaggaagtcaggacctgacaatgaggacggcaaatggcgagttt
aacttttctgcatcttcagcccgagttcccagcactctcacccaggtctaccttactgct
gtggcagcttttctcagccgtctccctgatcagggaggcggagataacaggccaaaggct
gctagatcttctttgagtaatactgacagtatgctatccacctttgttcagtatccatct
gaactctgggagctgagtcaagtggcttggaaaggcgtagaggaaggcaagatcctcttt
atgaaagaagatgttccagagactattttacagttattagtcaagagtggccttttttca
caggttgagctcagatgtcacgatggaacactagttaacgcttacagtttcattcatttg
actgtgcaggagttcttggctgctcttagaatcatgacaagtcataaagttagtgatgca
cagctgaaaaagagattcagtctgaaaactcgctggacaacaaagtccgaccagaagacg
ccatttactgattccctgtacctgtatgtatgtggtctggcttccccaaactgcactcaa
gtcctggttgaagtagccagggcttcaggtgtgaaaggagttcaaaactgggtccagaaa
cgacaagaccttgtcctacgtttgctgagacccctgtgtcacagcaacacactgactgga
ccaaagttattgcagctttgcaactgcatccaggagagccaggactacgaactagcacag
caggctttgagggcaaggcccactctggaactgcgcaacttccggctggtgcccaatgat
attgatgctttggctttcgtagttaactcagctgctgatcaggctgttggtttggatttt
ggagcatgctcaatggagccagagtgtttagatgcactgtcgaggtgccagtgcattcat
ttcctcagttttcacagccggaagtataatgacaagtttgcggagaagttgtcctgtatt
ttgcctggatttccaaacctgagaaaacttgagttttctggtgccagtctgacagccgct
ggagcaaaaagtttggcctcaggtctacaaaagtgctgcaacatcactgagataaatctc
agtgacaacaatctgcaagatgatggatttgggcatgtggttgagctttttaccaaactg
ccaaatctcagttctgtaaagctgggccgaaacaacagctctctgcaagcgctgaactgc
attgttgagaaaatgggttcctgtttgaacatcctgcaggtttatgcagatggtgtgaag
gaagtagtggttacattttcaaaagaatctgatggcaacagtcagaaaacaaagcctgag
ccaacaatcagcttgttaaatcagaaatggaacaagctggagatgcaaaacctggtgaag
tcactggttaactgtcctgctttgtcagtcctagatctttctggaggctgctgggatgat
gaaactctaaaagcatttacatactttgttccaaagcttaagatctgtagaaagattgtc
ttggatgacagctgctcatcagtggagtctttggtgatgctggttgctctgctgtctgac
tgtcctcttgttattgggctgaatataagattgcagaaccctgtccaggcatctctggtg
tttgctggaggaacggaaaacccctcaagtgaaatctctaaaacactatgtcttagctgc
tgtaaactggttcccgctcacctagaaagagtttggcaaagcctcagaaccacttcaggt
ctcactcagctcaacttgtccagtaattgtttgggtgacaaaggtctgaagaagttgttg
gatattctgcctcatttagacaaaatccaagaaataaatgccagtaacaatgacctcagc
atggaaggagcagtgatgttggcaggggctctatgctcccataaccacttgacacaagtt
cagatcagtcatgaaggcaaaggtcaggtgattttacaattcaaccctgaaaaaagtgaa
atcaaacagcaaacaaagacattcagaatactgaacagcagcctttcaacttcggttata
gctaaagtttgcagtatgctggtcaactgcgtctttcacttggacttagagttctccttc
tgttcatttgctgaaaaagctcttaaaatgatgctaagaatgttgcctcggatgtcatct
ctacaaaaactcggtgttgaatgcagcatcacttctacaaaagatgctctcactctggtc
agctgcttgaaagacaataatcgagttacttcagtggatctcagtccacagggtgagtcc
ttcatcaagtttggctgcatgaaaacagaacacgtcatcttcaggttaagtcacttcttc
ttcagggaggagaacattcagatgctgcttcagatcctgcagcagggagtgcagctgtct
taccttgacttgtcaggcaaccagttaggagatgctggagtgaagagcttggtggatttt
ctaccaaaccttcaaataagctgctttgtcaatgtcagcaacaatggactgagccagcag
gggcttcttgatgtggtttcaactctccacagctcttctgatgcctctgctgtggaagtc
agtttgagcgaagacgagaggtgtctcattcggtttgaagagggaaatcatgaaaaatct
ttaagtgtcagaaactgcagtctgcagcgggatcatctaatcagattggcagaaattgtg
tccaactgtccaagtttgagcaaaatagaatttgagaacaatcttctgcagtcagagtgg
attgaaggtttttttaacatgttccaaccccgtcaaacagcatgcagtgtcagttttgaa
gaaagttggtttaaagctgaacaagctgttgatctactgcgtcactgcctggagatcaag
accaacattcaaacaatcagaattcatcataaaactcttcatctgaccatgaaggaaacc
tttgctctgacttctgcaagccttgttgacagagcagcagctgtggaacagaaagcatcg
atgtgcagcaccacccaacgcttcccttcactgaaggagctggacttctccctcgatata
ctggacattgaagaacatcagtttctgtgttccctcctgcctttgttgccaaatctcacc
agtctcagtgttgcgatgaaagtgggatctgtgtctgtggttgaggagctctcacaggtc
atctcgcagtcttcctccattcagtgcttaaatctgtcaggtcatgtcattaatgacaca
gccgctcacagcatggcagcgttcttacctcgccttcgatcgatcagtctgtcccactgt
gtgtggtctccagctgcagagctgcaggtcatcgaagccctgcaacagagcatcactttg
cagagcctgtgtctggactgtgtgcagttgagcgatgggggttggacagctttagctcag
gtcctaaagaacagcaactctatgcggtgcctcaggctagatgagattggaaaagcagct
ggacaaaccgaggcggacaggatgctggatctcctgactgtcatggaaggaaacaaacaa
atagaggagattgggttggacggctggaggatgtctgaaggggggattcagcagctgacc
catttcctgcctgactggaaagagctcaaaataatctgtctctccaagaacttcatgggt
gacacggcaggggagaggctgctggatgctttgaagagctgcatccacatgagagagctc
catttgtccagtaatgaccttggcgacctcactgctgccaggatgtctctggttctgccg
tcactcacacacctcactgtgttagatatttcagaaaaccatcttggacgtgacggcgcc
gccgctctgtccacagcaatacggagcttaaagaagctcacccagataaatcttacttct
gtcgggacctcagagctgagccttgttgctgccagtctggctgaatgccccctcattcag
gacgtgggacttggatggaacagatgtggagatgatgtggctctgcagctctctggactc
ctgccattctgtcccaagttagttcggatagatttggagtgcaacctcataggtgtttct
ggagtggagactttagttaaagcatcttggacctgtccttctctgcaagtcatcaggctg
tggaagaacagagtcccactgaatgagcagcagagattaatgctgaaggacaggaggctg
acattctcatccacgtga
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