Oryzias latipes (Japanese medaka): 101166243
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Entry
101166243 CDS
T02443
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ola00536
]
101166243
Glycosaminoglycan binding proteins [BR:
ola00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101166243
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
101166243
NCBI-ProteinID:
XP_023818729
LinkDB
All DBs
Position
15:complement(4173852..4315476)
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AA seq
731 aa
AA seq
DB search
MEVDQKRSTAASAGEKRRLSAERQHQTPKQPLRINWRLWSALSGCIVVSFLCFGVCVLVF
LRSSDLQTRIVSVEQRLQDAQLSAWMLSPEQVEPLVLARLDQILEEKLAVRLAKTRAVRE
APYGCLCPPGPPGPPGRAGFPGDKGSMGIPGRMGLKGQAGEKGAPGEPGLSIIGPRGPPG
QPGTRGFPGFPGPIGLDGKPGQNGLRGDTGPRGPIGLPGEPGPKGEKGVCGDYTHRTLFV
QDLPLKTLAALRSSQALTLKQGEPGVQGPPGPPGPPGPPGTPGLDGASGAPGKPGEPGKP
GKDPRLLQGLKGEPGVPGQKGDRGDVGPPGPEGPKGDEGKRGFPGERGEKGEPGFPGAPG
LKGQAGISGTPGIPGKRGYRGEKGEPGTLPQGMKGEPGSTGLPGPMGPKGDRGDKGDVGP
EGPSGQRGLPGPAGEPGRAEIQSSENDIRNIPLMGPPGLPGPPGTPGVPGTKGEVGLPGP
PGVDGEKGPRGKPGEPGPMGPAGPEGPRGERGVIGLTGPKGDMGPFGAPGLDGPTGEKGA
TGAPGPVGLPGTTGPKGEPGVGGRSEMIYGPPGPPGPPGPVGPAGSQGSSGPKGEPGIGI
KGEKGASGQKGDKGDRGHLGLPGAHGLDGRPGPVGLMGPAGMPGPAGPKGERGERGESGL
PGPVGPQGSPGLLGPKGNRGERGKKGGRGAKGDKGDQGAPGLDAPCPLGDDGLPVPGCWN
KGQHPFQLAKK
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atggaagtggatcagaagcggagtactgcggcttcagcaggtgagaagaggaggctgagc
gcggagcgtcagcatcaaactcctaagcagcccctgcggataaactggaggctgtggtca
gctctcagcggctgcatcgtggtctccttcctctgctttggagtttgcgttttggttttc
ctacggagctcggacctgcagaccaggatagtaagcgtggagcagcggctgcaggacgcg
cagttgtccgcgtggatgttgtctccagagcaggtggagcctctcgttctggcccgactg
gaccagatcctggaggagaaacttgcagttcgattggcgaagacccgggcggtgagggaa
gctccctatgggtgcctgtgtccccccggacctccgggccctcctggacgagcaggcttt
ccgggggacaaaggaagcatgggaattcctggaagaatgggcttaaaaggacaagcaggg
gagaagggagccccaggtgagccaggtctatcgattattggacccagaggacctcctgga
caacctggcactagagggtttccaggctttccaggtcccattggattggatggcaagcct
ggccagaacgggctgaggggggacacaggtccgcgtggtccaataggacttccaggagaa
ccaggacccaaaggggagaagggtgtttgtggagactacacacaccggactctctttgtg
caggatcttcctctaaaaaccctggctgccttgcgttccagtcaggctcttacgttgaag
cagggtgaaccgggagtgcaggggcccccaggaccaccaggaccccctggacccccaggt
accccagggcttgatggtgccagtggtgctccgggtaaacctggggaaccaggaaaacca
ggaaaagacccaaggctattacaaggactaaagggagagccaggtgttccaggacaaaag
ggtgatcgaggcgatgttggccccccaggtcccgaaggccccaagggagatgaaggaaag
agaggtttcccaggagagaggggcgaaaagggagagccaggtttcccgggtgcccccggg
ctgaagggccaggctggaatctctggtacccctggcattcctggcaagaggggctacagg
ggggagaagggggagccaggaactttgcctcagggtatgaagggagagccgggttctaca
ggactgccaggccccatggggcccaagggtgacagaggtgataagggggatgtagggcca
gaaggtccatctggacaaaggggtcttccaggcccagccggagagccaggacgagctgaa
atccagtccagtgaaaatgacatccgaaacataccactgatgggtccccctggattgcct
ggaccacccggaacacctggtgtgcctggcaccaagggggaagttgggctgccaggtcct
ccaggagtggatggagaaaagggacctagagggaagcccggagagcctggtccaatgggc
cccgctggtcctgaaggtcccagaggagagaggggtgtcattggcttaactggacctaag
ggcgacatgggtccatttggagcacctggtttagatggccctacaggtgaaaagggggct
actggggcccctggccctgttggattacctggcacaacgggtcccaagggtgaaccggga
gttggaggaaggtcggaaatgatctatggtcctccagggcctccaggacctccaggacca
gttggccctgcaggatcacaaggatcctcaggaccaaagggagagcctggtataggaatc
aaaggagaaaaaggagcgtcgggtcagaagggggacaaaggagacagaggccacctcggg
ctccctggggctcatgggttagacggcagacctggtccagtgggtctgatgggaccagca
ggtatgcctgggccagcaggaccaaagggggagcgaggtgaaaggggagaatcaggatta
ccaggaccagtaggaccacaaggcagccctggattacttggaccgaaaggaaaccgggga
gagaggggcaagaaaggcggcaggggggccaaaggggataagggagaccaaggagcacct
ggattagatgccccttgtccgttgggcgacgatggcttacccgtaccaggatgttggaat
aaaggtcagcatccattccagctggctaagaagtag
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