Oryzias latipes (Japanese medaka): 101166545
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Entry
101166545 CDS
T02443
Symbol
chl1
Name
(RefSeq) neural cell adhesion molecule L1-like protein isoform X1
KO
K06758
L1 cell adhesion molecule like protein
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ola04515
]
101166545 (chl1)
Cell adhesion molecules [BR:
ola04515
]
Immunoglobulin superfamily
L1 family
101166545 (chl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
fn3
ig
Ig_2
Bravo_FIGEY
V-set
FN3_DSCAM-DSCAML_C
Fn3_VIN3
Ig_PDGFR_d4
Ig_6
Motif
Other DBs
NCBI-GeneID:
101166545
NCBI-ProteinID:
XP_020559042
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Position
5:22446935..22541969
Genome browser
AA seq
1286 aa
AA seq
DB search
MTQQRGSGFVALLTAVNCFFAFPSAAAMDIPLEVLTHANIEQLPTITAQSPGAVIALPPE
ESFAVTCEAKGNPEPEFRWTKNGQEFDPSLDPLLRKEENSGTFVIPNNGNLTEYQGTYRC
FAFNKLGTAVSQEIGFMVPKIPKFPKEGFDPFKVDEGQPFILKCDPPKGIPPLQIYWMTM
YLQHIEQDDRVSMGLNGDLYFSHVEEKDSRRDYCCFAAFPKIRTIVQKSAMSVVVSPRKS
ESPDGANSILQRKPSLLTPPGVRSEAVLVKGEDLKLECIAEGIPTPKVEWEKMGHGRPEK
FRLENHGKVLVVPGDEQDVGGKYMCKAKNPLGEVVHYFTVTVEEPPEFLVEPQSQLSMIG
ADVVIKCSVSGSPQPVTTWSVNGVPLQETLSANRKIFDDTIIIQNGQPSDSAVYQCEASN
KHGKILTNANIMIMNLYPIILTSDGQEYSAVEDQGVMMHCKVFSSPPSTIFWSKDDSSEL
VTGPRFTVHDNGSLEIHTIEKGDTGQYTCLAKNLEGTSAIDAMLYVKDPTKIVAPPQDQS
ILIGTDAQLSCLVEFDESFRGDFELLWQKDDEEISPNNTEHSSRYFLEEGVLHIVNVSHR
DQGEYRCVAKTPVDSDAASARLIVLDVPDAPQSVVLSERKNRSVKLRWVPGEDHNSSITE
FVIEFEENKWQPGSWRDLQRVPGNHNSAVLDLHGHVGYRFRVYAVNAVGAGPPSKPTERY
LTPPAAPDKNPENIKIEGHLPHEMDINWEPLSPIEHNGPGLEYKVSYRRQDVEDEWKEHT
VKRHSFVVRNTPTFVPYEIKIQAKNHQGWGPEPKMVTGYSGEDFPSAAPDDVAVEVMNSS
MVNVTWKQVPKDKLHGHLGGYRVNWWRMRSLLHSKQSQGERHTAAFPGSRSHGTVSGLVP
FSEYSLIVMSFNGRGNGPGSKAVNFKTLEGVPEKIPVFRVADVQKRSISLAWTPPLEPNG
ILTGYLLEYQLINDTEEAGPLQRVNISKPDTTRWHLRDLEPLSKYRFQLRSCTSMGCGSI
VSLESTTLETTSALASTIGLSMTSPTSPPSSPKSRVTKPTRSTIALLNVSSAAADTSANI
SWIFGGEHALFHIAYANKREGRWQISEALNTSKTFYIIEGLEPHSEYSVRFILYSWFDNA
SIFEDVFMTKGLASVHTGISSQGWFIGLMSAIALLTLVVLIACFVNRNKGGKYSVKEKED
LHPDVESQGINDDTFCEYSDNDEKPLKGSQHSLSGGLKAEDSGDSLVDYGDDDAQFNEDG
SFIGEYAAKKEKRASAEIKATAQTPA
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atgacacagcaaagaggctcaggatttgtggcactgttgactgctgtcaactgttttttt
gcctttccttcagctgcagcgatggacatcccactggaagttttaactcacgcaaacatc
gagcagttgcccaccatcacggctcagtctcccggcgccgtcatcgccctgccccccgaa
gagagcttcgccgtgacgtgtgaagctaaagggaatcccgagccagagttcaggtggaca
aagaacggccaggaatttgacccctccctggaccccctcctgaggaaagaggagaattct
gggacctttgtgatacccaataatggaaacctgacagagtaccagggaacgtaccgctgc
ttcgccttcaacaagctggggactgcagtctctcaggagattgggttcatggtgccgaaa
attcccaagttcccaaaagagggatttgatccattcaaggtggacgaaggtcaaccgttt
atccttaagtgtgacccacctaaaggcatcccccccctgcagatctactggatgaccatg
tacctgcagcacatcgagcaggacgaccgcgtctccatgggcttgaacggcgacctctac
ttctctcacgtcgaggagaaggacagcagaagggactactgctgcttcgccgccttcccc
aagatccgcaccatcgttcagaagagcgccatgtccgtcgtcgtcagcccgaggaaaagt
gagagtcctgacggcgcaaactccatcctgcagaggaaaccctctcttctgacgccccct
ggtgtcagatcagaagcagtgctggtcaaaggagaagacctgaagctggagtgcattgca
gaaggaattccaactccaaaagtggaatgggagaagatgggtcacggacgtcctgaaaaa
tttagactggagaatcacgggaaagttctggttgtcccaggagacgagcaggacgtcggc
gggaagtacatgtgcaaagccaagaacccgctgggagaagtggtccactacttcaccgtt
actgttgaagagcctccagagtttctggtggagccgcagagccagctcagcatgatcggc
gctgacgtggtcatcaagtgctcggtcagcgggagcccccagcccgtcacaacgtggagt
gtcaacggcgtgcctctgcaggagaccctgtcagccaacaggaagatatttgacgacacc
atcatcatacaaaacggccaaccgtcggacagcgcagtgtatcagtgcgaggcctctaac
aagcacgggaagattttgaccaacgcaaacatcatgatcatgaatctgtacccgatcatt
ctgaccagcgatggacaggagtactctgctgtggaggatcagggcgtgatgatgcactgc
aaagtcttcagctctcccccttccaccatcttttggagcaaagacgactcttctgagttg
gttacgggacccaggtttacggttcacgacaacgggtcactggagatccacaccatcgag
aaaggcgacacgggccaatatacgtgtttggccaaaaatttagagggaacctcagcaatc
gacgccatgctttatgtaaaagatcccaccaaaatagtggcgcctcctcaggaccaatct
atcttgattggcacggatgctcagctctcctgcctggtagagttcgatgagtccttcaga
ggcgactttgagctcctttggcaaaaagatgacgaggagatttcccccaacaacaccgag
cattcgagcagatacttcctcgaggaaggcgttctgcacatcgtcaacgtgagccacaga
gaccagggcgagtacagatgtgtggctaagactccggtggacagtgacgcggcgtcagcc
cggctcatcgttttggacgtccccgatgcgccccagagtgttgtcctgtctgagcgtaag
aacagaagtgtgaagctgcggtgggtcccgggagaagaccacaacagctccatcacagag
ttcgtcatcgagtttgaagaaaacaagtggcagccgggcagctggagagatctgcagcga
gtgccgggcaaccacaactccgccgtcctcgacctccacggccacgtcggctaccgcttc
cgcgtctacgccgtcaacgccgtaggggcggggccgcccagcaagcccacggagcgatac
ctgaccccccctgcagccccggacaagaaccctgaaaatatcaaaatcgaaggtcatttg
ccacatgaaatggatatcaactgggagcctctgtcgcccatcgagcacaacggccccggt
ttggagtacaaggtgagctacaggcggcaagacgttgaggacgagtggaaggagcacacg
gtgaagcgccactcgttcgtggtcaggaacacgcccacgtttgtgccgtacgagatcaag
atccaagccaagaaccaccagggctggggccctgagcccaagatggtgacaggatactcc
ggagaagactttccctcagctgcgcccgacgacgttgccgtggaagtgatgaacagctca
atggtcaatgttacctggaaacaagtacccaaggacaagctgcacggacacctgggaggc
tacagggtaaactggtggcgtatgcgcagcctgctgcactcaaagcaaagccaaggagaa
agacacacggcggccttcccaggcagccggagccacggcacagtgtcgggcctggtgccc
ttctccgagtacagcctcatcgtgatgtccttcaacgggcgaggaaacggtccgggcagc
aaagccgtcaactttaaaaccctagagggagtccctgagaaaatccctgtttttagggtg
gcggatgttcaaaagcggtccatatctctggcctggacccctcccctggagccaaacggg
attcttactgggtacctcctggagtatcagctcatcaacgacacagaggaggcggggcct
ctccagagggtgaacatcagcaaacccgacactaccaggtggcacctgcgggacctggag
cctttgagcaaatacaggttccagctgcgctcctgcaccagcatgggctgcggatccatc
gtcagcttggagagcacaaccttggaaacaacttccgctttggcttccactattggcctc
agcatgacatctcccacctcacctccaagcagtccaaagtcacgagtgaccaaacccact
cgatccacaatagctctgctgaacgttagctcagccgctgccgacacctctgccaacatc
agctggattttcgggggagagcacgctctctttcatatcgcgtacgcgaacaaacgtgag
ggtcgctggcagatatcagaggctctgaacacctctaagaccttctacatcattgaggga
ctcgagccccactctgagtactctgtgcgcttcattctttacagctggtttgataacgcg
agtatatttgaggacgttttcatgaccaaaggtctcgccagcgtccacacaggaatatcc
agccagggttggttcatcggcctgatgagcgccatcgctctcctcacactcgtcgtcctg
atcgcctgcttcgtcaacaggaacaaaggcggaaagtattcagtcaaagaaaaagaagac
ctccacccagacgtggagtcccagggaataaatgacgacactttctgcgaatacagtgac
aacgatgagaagcccctgaagggcagccagcattcgctgagcggggggctcaaggcggag
gacagtggggacagcctggtggactacggtgacgacgacgcacagttcaacgaggacggc
tccttcattggcgagtatgcggcgaagaaggagaaaagggcatcggcggaaatcaaagcg
acggctcaaactcccgcgtga
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