Oryzias latipes (Japanese medaka): 101166667
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Entry
101166667 CDS
T02443
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
101166667 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ola03032
]
101166667 (topbp1)
03400 DNA repair and recombination proteins [BR:
ola03400
]
101166667 (topbp1)
DNA replication proteins [BR:
ola03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
101166667 (topbp1)
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
101166667 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
ECT2_BRCT0
BRCT_TopB1_SLF1
Motif
Other DBs
NCBI-GeneID:
101166667
NCBI-ProteinID:
XP_023806147
LinkDB
All DBs
Position
20:complement(21459824..21475561)
Genome browser
AA seq
1503 aa
AA seq
DB search
MSKVEKERFIVKFVESKGSNAEYAVKAYEAILELQSEKYLKKVKEEEVLQMEEKDKSLFV
FSSFTSPAFLHCKKHGCRIVSPLVVLYCLQQQRCVPKAEKPVYNMAMADVTISCTSLEKA
ARVDVMDLVQLMGGRACLDLNVSVTHLIAGEVGSKKYLVAANLGKPILLPSWVKACWEKS
QNSLFRYTDLPMDEYLCPVLLGCTVCVTGLSSTERKEVQRLCEQHGAKYSGQLKMNECTH
LIVSEPAGQKYECARKWNVYCVSLHWLFDSIEKGFCQDESRYAVERRASNTSRPHTSTPT
GNGRKEDGPSLLGLSNISVSGSMAINDTALTISRLETADPIDGLDLTVCPADDLLDGCKL
YLCGLPLKKLEKLRRLVNNAGGLRFNQPSEELTHVVMGEPDQELTKFLSKAAYRPHVVTV
QWLLDSYSRGRLLPEAEYLHPDCLPPDSASVPAGHVVKPRLSAGPPVASPSTPRQNRLEE
DLLSQYMDDDPTVVDMPPPAAENSGRRSISAAAEPQSKPQAPSLTRGPEQDSALQEFSET
GLFSGKSFLFVGFGVEAEAQLSTLVIEHGGKVLAGRCRAVADYAVVPLLGCSVEATVDEV
VTDTWLAMCVEKECVLLLSSNPLFTPVAVREGCFPLEGCVLSVSQFIGAERESLIQLAKH
VGADVQDYFVRFAIKKKGMVASTHLVLQSPDGTKFQAAKKWGLPAVSMHWILESARTGQK
AAEEMFLVDLPPSPERDDESFVGGSQKPAQARNSPEIPLLGPQSGKAVTPLDLGRFQSKV
FHSVLDEMKPKDGLSTPKQNPDGSRRHAHREASLQLDTPSRFLSRDQLFRPSFNVKDALG
ALETPGGRLKPGEKVETPLTDVINRNLKVALANSSRNNVSEMQAASGSPELGKSTEKEKD
PQKEAGPLAGVVVCVGKKLSKMQTELNAVAASLGADFRWAYDDTVTHYIYQGRVGDNSRE
YKGVKERGVHVVSQYWLQACADEQKRVPESLFPFTYNPKMSLNLSQVPSSSQRSPPLTRT
QRRDAAAAKLSFSEEEAPALRRASDGSADQEDLDHTERTDTLEMRENLQKQLQEIMSATK
LTTGRRTSVRLAKMGSGGADSGPHTPEGSRMGRSGSRRTLEALRVSREAALDVNTEPSQS
EQIVWDDPTAREERAKLADNLQWPGSPSQHSDPIVAAPPPTAEPAPQMKDSMTDSELVEM
AACDVIDQHLGQKLITPPSEEAEDDILTPKAPCIAFPLTKPTAAPEPLREEEKKEKQPPR
FQMSSLSPQERIDYSHVIEDLGGVVLEKQSFDPSCSHIIVGSPLRNEKYLAAMAAGKWIL
HRSYLEVCRGVGRFIQEDDFEWGSSCILDALPSITLQQRRLATAAMRWRKALQGSREREG
AFSGWTVMLNIDQSRESGFRRLLQSGGAKVLPGPSPSLYREATHLFADFSRLKPDDFKVD
VSQARSLGVKCLKPEYIADYLMQVPTPPVELYFLPAAEDAPDTPSRKRKAEADVSRLKKS
RLT
NT seq
4512 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaagtggaaaaggagcgctttattgtgaagtttgtggagagtaaaggatctaat
gctgaatatgctgttaaagcgtatgaggccattttggagctgcagtctgaaaaatattta
aagaaggttaaagaggaagaggttttacagatggaagagaaggacaagtctctgtttgtg
ttcagcagttttacctctcctgcctttctgcactgcaagaagcatggctgtagaatcgtg
agccccttggtggttttgtactgcctgcagcagcaacgctgcgtcccaaaagcagagaag
ccggtctacaacatggccatggctgatgtcactatttcctgcaccagcctggaaaaagcc
gcacgggtggatgtgatggatctggtgcagctcatgggtggacgtgcctgccttgatctt
aatgtgtccgtcacacatttaattgctggggaggttggaagcaaaaagtatctggtggct
gccaacttgggtaaacccatccttctaccctcatgggtcaaagcctgctgggaaaaatct
cagaatagcctttttagatacacagacttgcctatggatgaatatctgtgccccgtgctg
ctcggatgcaccgtttgtgtgacaggcctgtccagcacagaacgcaaagaggtgcagcgc
ctctgtgaacagcacggcgccaagtacagcggccagcttaaaatgaacgagtgcacgcac
ctcattgtcagtgaaccagcaggtcagaagtacgagtgtgctcgcaaatggaatgtgtat
tgcgtatctctgcattggctatttgacagcatagagaaaggtttctgtcaggatgagagc
aggtacgccgtggagcgccgcgcgtcaaataccagccgacctcacacctcaacccccaca
ggcaacggcaggaaggaagatggtccttcgcttttgggcttgagcaacatttctgtgagt
ggcagtatggcgatcaacgacacggccctcaccatcagccgcctggaaacggccgatccc
atagatggtttggatctcaccgtttgtcctgctgatgacttactggatggctgtaagctg
tatttgtgcggccttccactgaagaagctggagaagctgcggcgtcttgtcaacaatgca
ggaggtctacgtttcaaccaaccaagcgaggaactcacacatgtggtgatgggagagccg
gaccaggaactcacaaagtttctttccaaagcagcttacaggcctcatgtagtcacggtg
cagtggctgctggacagttactccagaggcaggctccttccagaagctgagtatttgcac
cccgactgcctgcctcccgattctgcatccgtgcccgccggtcacgtggtgaagccccgc
ctttcggccggtccacctgttgccagccccagcacccccagacaaaacagactggaggag
gatctgctctctcagtatatggacgatgatcccacagtggttgatatgccaccaccagct
gcagagaacagcggcagaaggtcgatcagtgcggctgcagagcctcagtcgaagccccag
gctcccagcctcaccaggggaccagagcaggactccgctttgcaggaattcagcgagacg
ggcctgttttctgggaagtcttttcttttcgtgggctttggtgttgaggcggaggcacag
ctctccacgctggtgattgaacatggaggaaaggtgctggctggccgctgtcgcgcggtg
gcagactatgccgtggttcctctgctgggatgctcggtcgaggccacagttgacgaggtg
gtcacggatacgtggctggccatgtgtgtggagaaggagtgtgttctcctgctgtcgtcc
aacccgctgttcactcctgtggctgtgagggagggctgcttccctctggagggctgcgtt
ctctcagtcagccagttcatcggagcagagagggagtctttgatccagctggccaagcat
gtcggagccgatgtccaggattactttgtgcgctttgctattaagaagaagggcatggtg
gccagcactcatctggttttgcagagtccagacggcacaaagttccaggcagcaaagaag
tggggcctccctgctgtgagcatgcactggattctggagtcggctcgaacaggacagaaa
gcagcagaggagatgttcctggttgatctacctccttcaccagagagggacgatgagagc
ttcgtcggcggctcccagaaaccggctcaagctcgtaactctccagaaatccccctgctg
ggcccgcagagcggtaaagctgtcacccctctggatttaggtcgctttcaaagcaaagtg
tttcactctgttctggatgagatgaagcccaaagacggcctcagcactcccaaacaaaac
ccggatggcagcagaagacacgcccacagggaggcgtcgctgcagctggacactccctcc
cgtttcctcagcagagatcagctcttccgtccgtccttcaacgtcaaggatgctcttgga
gctttggagactccagggggaaggttgaagccaggcgagaaggtggagactccacttact
gatgtcatcaacaggaatctgaaagtagctttagccaatagctcgcggaataatgtctca
gaaatgcaggcggcttctggaagccctgaactgggaaaatccactgagaaggagaaggac
ccgcagaaagaagccggaccgctggctggagttgtggtctgtgtgggaaagaagttgagc
aaaatgcagactgaactaaacgccgtcgctgcctcactgggagcagacttcaggtgggct
tatgacgacacggtgacacactacatctaccagggccgggttggggacaacagccgtgaa
tacaaaggagtgaaggagaggggggtgcatgtggtctcccagtactggctgcaggcctgc
gctgatgagcagaaacgggttccagagtccctgtttcctttcacctacaaccctaagatg
agcctcaacctgagccaggtgcccagcagctcccagagatctccacctttgacacggaca
cagcggagagacgccgctgcagccaagctcagtttttccgaagaagaagctccagctctg
cgccgtgcgagtgatggaagcgcggaccaggaagatcttgatcacacagagagaacagat
actctggaaatgagggagaacctgcagaaacagctgcaggagatcatgtcagccaccaaa
ctgacgaccggcagacgcacttcagtcaggctggcaaagatggggtccggtggggccgac
tcaggccctcatacacctgaagggagccgaatgggacggagtggaagcagaagaaccctg
gaagctttgagagtttccagagaagcagcgctggatgtgaacacggagccctcgcagagc
gaacagatcgtctgggacgacccgacggcaagagaggagagggccaagctggccgataac
ctgcagtggcccggcagcccctcgcagcactcagaccccatcgtggccgctccacccccc
acagcagaaccagcaccacagatgaaggactccatgaccgactccgagctggtggagatg
gctgcctgtgacgttattgaccagcacctggggcagaagctgataactcccccatcagag
gaggcagaagatgatattctcacgcccaaagccccctgcatcgcttttcctctcaccaaa
cccacagcagcccccgagcctctgagagaggaggagaaaaaagaaaaacagccccccagg
tttcagatgtcctccctcagccctcaggagcgcatcgattacagccacgtcatcgaggat
ctggggggtgtcgttttggaaaagcagtcgtttgacccgagctgctcccacatcatcgtt
gggagtcctctgcgtaacgagaagtatctggcagcgatggcggccgggaagtggatcttg
caccgctcctacctggaggtctgtcgcggcgtgggcaggttcattcaggaggatgacttt
gaatggggcagcagctgcatcctggacgcgctgccctccatcactttgcagcaacgcagg
ctggcaaccgccgctatgcgctggagaaaagccctgcagggaagtagagaacgtgaggga
gccttcagcggatggacggtcatgctaaacatcgatcagagcagagaatcgggcttcaga
cggttactgcagtcaggcggagcgaaggtccttcccggtccgtcaccttccttgtaccga
gaggcgactcacctgtttgcagatttcagtcggctaaaacccgacgatttcaaagtggac
gtatcgcaggccaggtcgctcggggtgaagtgtctgaagccagagtacatcgcagattat
ctcatgcaggtgccaacccctcctgtggagctgtacttcctgcctgcagctgaggacgct
cctgacacgccgtcacgtaaacgtaaagcagaagcggacgtttcccggctgaaaaagagc
cgcctgacctga
DBGET
integrated database retrieval system
