Oryzias latipes (Japanese medaka): 101166712
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Entry
101166712 CDS
T02443
Symbol
chd5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ola03036
]
101166712 (chd5)
Chromosome and associated proteins [BR:
ola03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
101166712 (chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_CHD1_Hrp3
PHD_2
DEAD
AAA_22
Motif
Other DBs
NCBI-GeneID:
101166712
NCBI-ProteinID:
XP_023811074
LinkDB
All DBs
Position
5:complement(32167791..32218921)
Genome browser
AA seq
1984 aa
AA seq
DB search
MPGSLSNEEEGQDDMDLEEELPDEDDDGERRTVPLTPLASFFSDEDSLREQKRKKPKKMK
EGKIPKVKKRKKEGGLHIRLDSDPETSEVEDERERPDIGSGSESSTYVTMKKKKKKPREK
KEKKPRKKKRDGEEEEDGNDDGSMKEPKSSGQLMHEWGLEDVQYGFTEDDYKTITNYKAF
SQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGASATAVAAAVAAAVETVTVAQ
PTPVSCSQPTAQQGPLKKAKTKEGKGPGVRKRSKAVKDLKKKAKPKKTKSKSGQSGKKKK
ASSSEEDFLEESDFDDISIHSASVLSDTSGAANKKKARRGRKKRKKEDGDGYETDHQDYC
EVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEAKDEEEDEEEP
VGEEEDDHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMCPPLKG
KVQKILHWTWGEPPLPAEPPAGPDGKPSDPLSNPPLKGRPEREFFVKWAGLSYWHCSWVS
ELQLELYHTVMYRNYQRKNDMDEPPPYDYGSGEEEINNEKRKSKDPQYAVMEERFYRYGI
KPEWMVMHRILNHSFDRDGDVHYLIKWRDLPYDQCTWEVDDFDVPEYDSHKACYWDHREQ
ILGEDQRPLVVRKGKKLREEHQKREAPPDAPIIDPTIKFEHQPWYINATGGTLHPYQLEG
LNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPLSTIINWERE
FEMWAPDFYVVTYTGDKDSRAIIRENEFTFEDSAVKSGRKVFRMKKDTPIKFHVLLTSYE
LITIDQAILGSISWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEELF
HLLNFLTPDRFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELI
VRVELSPMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAP
VLPNGSYDGNLLVKSSGKLTLLQKMLKKLKDEGHRVLIFSQMTKMLDLLEDFLEFEGYKY
ERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLASADTVIIYDSDWNPHND
IQAFSRAHRIGQNKKVMIYRFVTRGSVEERITQVAKRKMMLTHLVVRPGLGSKTGSMSKQ
ELDDILKFGTEELFKDEMEAARTMGDNKDGEEGSVIHYDDDAISKLLDRSQDATEDTDIQ
NMNEYLSSFKVAQYVVKEEDGEEEVEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNL
GKGKRIRKQVNYNDTTQEDQEWQDDLSDNQSEYSVGSEDEDEDFEERPEGGRRQSRRQLK
NEKDKPLPPLLARVGGSIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSE
REFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVN
GKLSSPDLIPIGIELKKLTESVSSDPNTPAPASPAATRPGTPIPQEKTESLMGGCEDKET
TEQDGRKGPEQEVTEPEPVPDKASDGEDKAVIDDKTSDDRSRTEPPPTKPEPTETPPAHP
APKADSKEIVKPSEKRDSASPPDKNEDKENKPDEAKSDEPLESRLNGDRDTLEETEDSRK
EDRNGFKAKFMFNIADGGFTELHTLWQTEERAATSSPKMHDIWHRRHDYWLLAGIVTHGY
ARWQDIQNDPRYAILNEPFKSEMHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLN
MTQDPSHPAMALNTRFTEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKA
DVTRLPNMLSRIPPVSARLQMSERSILSRLTSRGGEPPPQQTFGQGGFACSQMYGGGFAA
GFRGPGGQPMVNYSQMPLGPYVSVSNGTALPTSHLDKKSLDSLRDVGTPDLKSGKPTDVI
CIED
NT seq
5955 nt
NT seq
+upstream
nt +downstream
nt
atgccggggtcgctgagcaatgaagaggagggacaggacgacatggatttggaagaggag
ctgccagatgaggatgatgatggcgagcgccgcaccgtccccctcacaccccttgccagc
ttcttctccgatgaagactccctcagagaacagaagaggaagaagcccaaaaagatgaaa
gaggggaaaatacccaaagtgaaaaagaggaagaaagagggaggactccacatccgactg
gacagtgacccggagacgtcggaggtggaggatgagcgggagcgcccggacattggctcc
gggagtgagagcagtacgtacgtcaccatgaagaagaagaagaagaaacccagggagaag
aaagagaagaagcccaggaaaaagaagagggacggggaggaagaggaagacggcaatgat
gacgggagcatgaaagaacccaaatcctccggccagctgatgcatgaatggggtcttgaa
gatgttcagtacggcttcacagaggacgactataaaaccatcaccaactacaaggctttc
agccagttcctgaggcctctcattgccaagaagaacccgaagatccccatgtcaaagatg
atgactgtgctgggggccaaatggagagagttcagcgccaacaacccgttcaagggcgca
tccgccaccgctgtggctgccgctgtggccgccgccgtggaaaccgtcaccgtggctcag
cccacgcccgtcagctgcagccagcccactgctcagcaaggtccattaaaaaaagccaaa
accaaagagggaaagggacccggggtccggaagaggagcaaggccgtgaaggatctgaag
aaaaaagccaagcccaaaaagaccaaatcaaagtcaggccaaagcgggaagaagaagaag
gcgtcttcgagcgaggaggactttctggaggagtcggactttgacgacatcagcatccac
agtgcctctgtgctttctgacacctccggggcggcaaacaagaaaaaggcccggcgtggg
cgcaagaaaaggaaaaaggaggacggcgacggctacgagacagaccaccaggactactgc
gaggtctgccagcagggcggagaaatcatcctgtgtgacacctgtccgagagcctaccac
ctggtgtgtctggaccctgagctggagaaggcccccgagggcaagtggagctgtccccac
tgtgaaaaggagggaatccagtgggaggccaaggatgaggaggaggacgaggaggagccg
gtgggcgaggaagaggacgaccacatggagttttgcagagtttgcaaggatggaggggag
ctgctgtgctgcgacacctgtccgtcatcctaccacatccactgcctcaacccgcccctc
cctgagatccccaacggggagtggttatgtccccgctgcatgtgtccccctctcaaagga
aaggtccagaagattttgcattggacgtggggggagcccccgctgccggccgagccgccg
gcaggacctgacggaaagccgtccgaccccctgagcaaccccccgctgaaaggccgcccg
gagagggagttctttgtgaagtgggcggggctgtcgtactggcactgctcctgggtcagc
gagctgcagctggagctgtaccacaccgtcatgtaccgcaactatcagaggaagaatgac
atggacgagccccccccatacgactacggctccggggaggaggagatcaacaacgagaag
aggaaaagcaaagacccccagtacgcggtgatggaggagcgcttctaccgctacggcatc
aaacccgagtggatggtcatgcaccggatactcaaccacagttttgatcgggacggtgat
gtgcactacttgatcaagtggagggacctgccgtatgaccagtgcacgtgggaggtggat
gatttcgacgtcccggagtacgacagccataaagcttgttactgggaccacagggagcag
atcttaggcgaggatcaacgcccccttgtggtgaggaaagggaaaaagctacgagaggaa
catcagaagagagaagctccccctgatgctcccatcatagatcccaccatcaagtttgag
caccagccctggtacattaatgccaccggagggacgctgcacccgtaccagctggaaggc
ctgaactggttgaggttctcgtgggctcaggggaccgataccatcctggctgatgagatg
ggtctgggaaagacggtgcagacaattgtgtttctctactcgctgtacaaagagggtcac
tctaaagggccgtttttggtcagcgcccctttgtccaccatcatcaactgggagagagag
tttgagatgtgggctccagacttctatgtggtgacgtacaccggagacaaagacagccgg
gcgatcatcagggagaacgagttcacctttgaggacagcgccgtcaagtctggacgcaaa
gtgtttcggatgaagaaagacactcccatcaagttccacgttctgctcacgtcctacgag
ctgatcaccatcgatcaggccatcctgggctccatctcgtgggcctgcttggttgtagac
gaggcgcacagactgaaaaacaaccaatcaaagtttttcagaatcctcaacgggtataag
atttactacaagctgctcctcaccgggactcctcttcagaacaatctggaggagctgttc
catctgctgaacttcctcacccccgatcgcttcaacaacttggagggcttcctagaagag
tttgcagacatctcaaaggaggaccagatcaagaagctccacgacctgctgggcccacac
atgctcaggaggctgaaagccgacgtcttcaagaacatgcctgcaaagacggagctgatc
gtccgggtggagctcagtcccatgcagaagaagtattataagttcatcctgacccggaat
ttcgaggccctgaactccaaaggtggagggaaccaggtgtctcttctcaacatcatgatg
gatctgaagaagtgctgcaaccacccgtacctgtttcctgttgctgctgtggaagctcct
gtgctccccaacggctcctacgacggcaacctgctggtgaagtcgtcgggaaagctgacg
ctgctgcagaaaatgctgaagaagctcaaagacgaaggtcacagagttctgatcttctcc
cagatgaccaagatgctggatctgctggaggatttcctggagtttgaaggttataaatat
gagcgtatcgatggggggatcactggaggcctgaggcaggaggccatagaccgcttcaac
gctccgggcgcgcagcagttctgcttcctgctttccacgcgggcggggggtctgggcatc
aacctggcgagtgcagacaccgtcatcatctacgactcggactggaacccgcacaacgac
atccaggctttcagcagagcgcatcgcattggccagaacaagaaggtgatgatctatcgc
tttgtgactcggggctccgtggaggagagaatcactcaggtggcgaagaggaaaatgatg
ctgacccacctggtggtgaggcccggcctgggctccaaaacgggctccatgtccaaacag
gagctggacgacatcctcaagtttggaaccgaggagctgttcaaggatgaaatggaggcg
gctcgaaccatgggcgataacaaagacggagaggagggcagcgtcatccactacgacgac
gacgccatctccaagctgctggaccgcagtcaggacgccaccgaggacacggacattcag
aacatgaacgagtacctgagctccttcaaggtggcccagtacgtggtgaaggaagaggac
ggagaggaggaggtggagagggagatcatcaaacaggaggagaacgtggaccccgactac
tgggagaagctcctgcggcatcactacgagcagcagcaggaggatctggcccggaatctg
ggcaaaggcaaacgcatccgcaaacaggtcaactacaacgacaccacccaggaggaccaa
gaatggcaggatgatctttcagacaatcagtcggagtactccgtggggtccgaggacgag
gacgaagacttcgaggagcgacctgaagggggacgcagacagtctcgccggcagctgaag
aacgagaaagacaaacctctgcctccgttactggcccgggttggaggcagcatcgaggtc
ctggggttcaacgctcgccagaggaaagccttcctcaatgccatcatgcgctggggcatg
cccccacaggacgccttcaactcgcactggctggtcagggacctgcgagggaagagcgag
cgggagttcagagcctacgtctccctcttcatgagacacctatgcgagccgggcgccgac
ggagcagaaacgttcgccgacggcgtccctcgagagggcctgtcccgtcagcacgttctc
accaggatcggagtcatgtcactggtcaggaagaaggtgcaggagtttgaacacgtaaac
ggtaagctgagttctcctgatctgattcccatcggaatagagctgaagaaactgacggag
agcgtgtcttctgatcccaacactccggcgcccgccagccccgccgccacgcggcccggc
acccccatccctcaagagaagacggagtctttgatggggggctgtgaagacaaggagacg
accgaacaagatggaagaaaagggccggagcaggaagtgacagaaccagaacctgtccct
gataaggcgtctgacggtgaagacaaagctgtcatagacgacaaaaccagcgatgacagg
agcagaaccgagcccccccccacaaaaccggagcccacggaaacgccccccgctcatccc
gccccaaaagcagactccaaagaaatcgtgaaaccctctgagaaaagagactccgcctcc
ccgccagacaaaaatgaagacaaggaaaacaagccagacgaagcgaagagcgacgagccg
ctggagagtcgcctaaacggagacagagacacgctggaggagacggaggacagccgcaag
gaggacaggaacggattcaaggccaagttcatgttcaacatcgctgacggagggtttaca
gagctccacaccctctggcagaccgaggagagagcagccacgtcttcacccaagatgcac
gacatctggcaccgtcgccatgactactggctgctggctggcatcgtaacacacggctac
gcgcgctggcaggacatccagaacgaccctcgctacgccatcctgaacgaacccttcaag
tccgagatgcacaaagggaactacctggagatgaagaacaagtttctggctcgccgcttc
aagttgttggagcaggctctggtgatcgaggagcagttaaggagggccgcgtatctgaac
atgacccaggaccccagccacccagccatggccctcaacacccgcttcactgaggtggag
tgtctggccgagtcccaccaacacctgtccaaggagtctctggccgggaacaagcccgcc
aacgccgtgctccacaaagtgctgaaccagttggaggagctgctgagtgacatgaaggcc
gacgtgacccgactgcccaacatgctgtcccggatcccgcccgtgtcggcgcgcctgcag
atgtccgagaggagcatcctgagccgcctcacaagccggggcggcgaaccccccccgcag
cagacttttggccagggcgggttcgcctgctcacagatgtacggcggcggttttgctgca
ggattcagaggacctggcggacagcccatggttaactacagtcagatgcccttaggacct
tacgtcagcgtgtcaaatggcaccgcactacccacaagccatctggacaagaaatccctg
gactccctgagagacgtgggaactcctgacctgaaatcaggcaaacctaccgatgtcatc
tgcattgaggactag
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