Oryzias latipes (Japanese medaka): 101166716
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Entry
101166716 CDS
T02443
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101166716 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ola03021
]
101166716 (sf3b3)
03041 Spliceosome [BR:
ola03041
]
101166716 (sf3b3)
03036 Chromosome and associated proteins [BR:
ola03036
]
101166716 (sf3b3)
Transcription machinery [BR:
ola03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
101166716 (sf3b3)
Spliceosome [BR:
ola03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
101166716 (sf3b3)
Complex B
101166716 (sf3b3)
Complex C
U2 SnRNP specific factors
101166716 (sf3b3)
Chromosome and associated proteins [BR:
ola03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
101166716 (sf3b3)
TFTC complex
101166716 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
101166716
NCBI-ProteinID:
XP_023811741
UniProt:
A0A3P9L6Q4
A0A3B3IK37
LinkDB
All DBs
Position
6:25097221..25129893
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNITLQRATGISHAIHGNFSGTKMQEIVVSRGKILELLRPDANTGKVHTLLTMEVFG
IVRSLMAFRLTGGTKDYIVVGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQY
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRLKYFDTIPVATAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENMSPIMSCQIADLANEDT
PQLYVACGRGPKSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGEKGTM
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPETNNLVLIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGAGQWASLVRLVNPIQGTTLDQVQLEQNEAAFSVAVCRFLNTG
DDWYVLVGVARDMILNPRSVSGGFIYTYRLTGGGEKLEFVHKTPVEDVPLAIAPFQGRVL
IGVGKLLRIYDLGKKKLLRKCENKHIPNIVTGIYTIGQRVIISDVQESLFWVRYRRNENQ
LIIFADDTYPRWVTTACLLDYDTMAAADKFGNISIVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEVVVNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPICGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDTHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtacaacatcaccctgcagcgcgctaccggcatcagccatgccatccatgga
aacttctcaggaaccaaaatgcaggagattgtagtttccagaggaaagatcctggagtta
ctgcgcccagacgccaacacggggaaagtgcacacactcctcacaatggaagtgtttggt
attgtgagatcgctgatggccttcagactcacaggaggaactaaagattatattgttgtt
ggaagtgacagcggacgcatcgtcatcctggagtatcatccatctaaaaacatgtttgag
aagatccaccaggaaacctttgggaagagcggctgcagacggatcgtcccgggacaatac
ctggctgtagaccctaaaggcagagctgtcatgataggggccatagagaaacagaagctg
gtttatattctgaacagagacgctgcagccagactcaccatctcctctcctctggaagct
cataaagccaacactctggtctaccatgttgttggagtcgacgttggctttgaaaatccc
atgtttgcttgcttagaaatggattatgaggaggcggacaacgacccaacaggagaagct
gctgcaaacacccagcagactctcaccttctatgagctggacctcggccttaaccacgtg
gtgcgaaaatacagcgaggctttggaggaacacggaaatttcctcatcactgttccgggg
ggttcagatggacctagtggagttctgatctgctctgaaaactacatcacctacaagaac
tttggagaccagccagacatccgctgtcccattccccgccgcaggaacgacctggatgac
ccagagcgcggcatgatctttgtgtgctcagccacccacaagaccaagtctatgttcttt
ttcctggctcagacggagcagggagacatcttcaaggtcacactggaaacggacgaagaa
atggtcacagaaatcaggctaaagtatttcgacacgattcctgtagcaacagccatgtgt
gtcctgaagactggcttcctgtttgtggcatcagagtttggaaaccattacctttatcag
atcgctcacttgggtgacgacgatgaagagcccgagttttcctctgccatgccgttggag
gagggagacactttcttcttccagcctcggccgctcaaaaacctggtgctggtggatgaa
caagagaacatgtcacccatcatgtcctgtcaaattgctgatttggcaaatgaagacact
cctcagctgtatgtcgcctgcggacgaggtcccaagtcaactctgagagttcttcggcat
ggactggaggtgtcagagatggctgtttctgagctgcctggtaaccccaatgctgtgtgg
acggtacgcagacatgtggaagacgagtttgatgcctacatcatcgtgtctttcgtcaac
gccactttggttttgtccatcggagagaccgtggaggaagtgacagattcagggtttctg
ggaacaacacccactctctcctgctctttgctgggagaagatgccctggttcaggtgtac
ccagatggcattcgccacatcagagcagacaagcgagtgaacgagtggaaaactcctggt
aaaaaaaccattgtccgctgcgccgtcaaccagaggcaggtggttatcgccctgacagga
ggggagctagtctacttcgagatggacccgtctggccagctgaacgagtacacggagcgg
aaggagatgtctgcagacgtggtttgcatgagcctggcaaacgtcccgccgggtgagcag
cgctcccgcttcctggctgtcggactggtcgacaacaccgttcgaatcatctccttggac
ccttcggattgtcttcagccgttgagtatgcaggccctccctgctcagccagagagtctg
tgcatcgtggagatgggaggtgtggagaaacaggacgaacttggagaaaaaggcactatg
ggcttcctctacctcaacatcgggctgcagaacggtgtgctgctgcggaccgtcttagac
cctgtgactggagacctgtccgacaccagaacccggtacctcggatcccgacccgtcaag
ctcttcagagtcaggatgcagggacaggaagccgtgctggccatgtccagccgctcctgg
ctcagctattcataccagtcccgcttccatctgacccccctgtcctatgagacgctggag
tacgcctctggctttgcttctgaacaatgcccagaaggcattgtggccatctccaccaac
acactgagaatcttggctctggagaaactgggagctgtcttcaaccaggtggcctttcct
ctgcagtacactcccagaaagtttgtgattcacccggaaacgaacaacctcgttttgatc
gagacggaccacaacgcctacaccgaagccaccaaagctcagaggaagcagcaaatggca
gaggagatggtggaagctgcaggtgaggacgagcgggagctggcagctgagatggctgca
gcattcctcaacgagaacctcccagagtccatcttcggagctcctaaagccggagccggg
cagtgggcctctctggtgcggctggttaaccccatccagggtaccactctggaccaggtt
cagctggagcagaacgaggccgctttcagtgtggcagtgtgccgcttcttaaacacagga
gacgactggtatgttctagtgggagttgccagagacatgatactcaaccccaggtccgtg
tctggaggtttcatctacacctaccgactcacaggtggaggagagaagctggagtttgtg
cacaagactccagtagaggacgttcctctggccatcgctccgttccaaggacgggttcta
atcggagttggaaaacttcttagaatttatgacctggggaagaagaaacttcttcgtaaa
tgtgagaacaagcacattcctaacattgtgacgggcatttacaccatcgggcagagagtc
atcatttctgatgttcaggagagtctgttttgggttcggtaccgacgcaacgaaaaccag
ctcatcatctttgccgatgacacgtatcctcgctgggtgacgacggcctgtctgctcgac
tacgacaccatggcggctgctgacaaatttggcaacatcagcatcgtgcgtcttcctccc
aacaccagtgatgacgtggatgaagatcctacaggaaacaaagctttgtgggacagaggg
ctccttaatggagcatcacagaaggctgaagtagtcgtgaactatcatgttggagagacg
gtgttatctcttcagaaaaccactctgatccccggaggttcagagtcgctggtctacacc
acactgtctggaggcattggaatcctggtccccttcacttcacatgaggaccatgacttt
ttccagcatttagagatgcacatgcgctctgagttcccccccatctgtggcagagaccat
ctcagcttcaggtcctactacttcccagtgaagaacgtgatcgatggggacctgtgcgag
cagttcaacagcatggacacacacaagcagaagagcgttgctgaggagctggaccggaca
ccgccagaagtctccaagaagctggaggacattcgcacacgttacgctttctaa
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