Oryzias latipes (Japanese medaka): 101166749
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Entry
101166749 CDS
T02443
Symbol
rnf40
Name
(RefSeq) E3 ubiquitin-protein ligase BRE1B isoform X1
KO
K10696
E3 ubiquitin-protein ligase BRE1 [EC:
2.3.2.27
]
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ola04121
]
101166749 (rnf40)
Enzymes [BR:
ola01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101166749 (rnf40)
Ubiquitin system [BR:
ola04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
BRE1 proteins
101166749 (rnf40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4
BRE1
zf-C3HC4_3
zf-C3HC4_2
zf-RING_UBOX
zf-RING_2
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
101166749
NCBI-ProteinID:
XP_011486466
LinkDB
All DBs
Position
19:9331998..9342552
Genome browser
AA seq
1031 aa
AA seq
DB search
MSGSGGGKRPSGGDSPPGPPEKKSKKEEKTTTTLIEPIRIAGVSSTEEMDMKVIQFKNKK
LCERLEQRQAMEDELREKIEKLEKRQATDDTTLLIVNRYWSQLEESVRLLRKRIEPEQPA
PAPPMAPVADATAVDDSGVRLSSPRSEGPAPPVPEIQSESEQMDQQQVEERQEKTQEEQQ
PPPPAGSEELLTQTEPAPESKTDSAPPPPPLSENAKGFLAVLEQSTEEELALHLQDRMQF
SKDAIAQLVCVFDRLHSRIDSMCRAAQEAACKDDNHPDIIQNRTLLEENTRLHELSTLLH
GRHHKMSMEYNELVDKVTSAETKVSEMETTVEDLQWDIEKLRNREQKLNKHLAEAMEQLK
SGYSSSGSSAGLAGGQITLNIQKFESLNAELEHNQELANSRMAELEKLQAELQEAVRESE
KLKMDLRNIPEEVVKETLEYKCLQSQFSLLYNESLGVKTQLDEARALLLTAKNAHLRQIE
HMESDELSLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPINREMRHLIS
SLQNHNLQLKGDVQRYKRKLRETQMEINKVDDDWFSFLTGCCNYLLKISMILKKLVLFPS
QLRCQSGETGVLILEEATSDGVEVKKEEDDDQEEEEERRKELERQRAREREREREAERER
EKERERDRQRSDELKRKDSDTLKMLRIELKKAQESQKEMKLLLDMYKSAPKEQRDKVQLM
AAERKSKAEVEDFRMRVRELEERERKESKKLADEDALRKIRVAEETIEHLQKKLAATKQE
EEALLSEMDVTGQAFEDMQEQNSRLLQQLREKDDANFKLMSERIKSNQIYKLLKEEKEEL
ADQVLTFKTQVDAQLLVVQKLEEKEGVLQSTLAALEKELGVRTQALELNKRKAVEAAQLA
EDLKVQLEHTQAKLKEIQVSVAENRTARERESSNLKRAQEDLSRLRRKLEKQKKVEVYSD
ADEILQEEINQYKAKLRCPCCNTRDKETVLTKCFHVFCYECLKMRYDTRQRKCPKCNCAF
GANDFHRIYIT
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgtctggttctgggggagggaagcgtccctcaggaggggatagcccccctggtccccct
gagaaaaagagcaagaaagaggagaagaccaccaccacacttattgagccaatacgtatt
gctggagtctcctctacggaggaaatggacatgaaggttatccagtttaaaaataagaag
ctgtgcgagcgcctggagcagaggcaagcgatggaggatgagttacgagagaagattgaa
aagttagagaagagacaagccactgatgacaccactcttctgattgtcaatcgctactgg
tcacagttggaagagagcgtaaggttgcttcgcaaacgcattgagcctgaacagcctgct
ccggctcctcccatggcaccagtagctgacgccacagcagttgatgacagtggtgtcaga
ctatcttcgccccgctctgaaggaccagcgccacccgtgcctgaaatccagagcgaaagc
gagcagatggaccagcagcaggtcgaggagcgtcaggaaaaaacccaggaagaacagcag
cccccaccgcctgccgggtcagaagagttattgacacagaccgagccagcaccagaatca
aaaacagactcagcaccgcctccccctccattgagtgaaaatgccaaggggtttttggct
gtgctcgaacaaagtacagaggaggaactggccttgcatctccaggaccgcatgcagttc
agcaaagacgccatcgcccagctggtgtgcgtcttcgacagactgcacagccgcattgac
agcatgtgcagagcagctcaggaagcagcatgtaaagacgacaaccaccctgacatcatc
cagaaccgcacattgctggaggagaacacgcgactgcatgagctgtccacgctcctgcac
gggcgccaccacaagatgtcaatggagtacaatgagctggttgacaaggtaacaagtgca
gagacgaaggtgtctgagatggaaacaacggtggaggacctccagtgggatatcgagaaa
cttcgcaacagggaacagaagctgaacaaacatctggctgaggcgatggagcagcttaaa
tctggctacagcagctctggcagctctgctggactagctggagggcagataactctgaac
attcaaaagtttgaaagtctcaatgcagagttggagcacaaccaggagttggccaatagc
cgcatggcagagctggagaagcttcaagcggagcttcaggaggctgtgagagagagcgag
aagcttaagatggatttgcgcaatattccagaagaggttgtgaaggaaacgttggagtac
aaatgtctgcagtctcagttctctctgctgtacaacgaatcactcggggtcaaaactcag
ctggatgaggcacgagctctcctgcttacagcgaagaacgctcatcttcgtcagattgaa
cacatggagagtgatgagctgtcgcttcagaagaaactgcgaaccgaggtaatccagctg
gaagacactttggctcaggtgcgcaaagagtatgagatgctgcgcatcgagtttgaacag
aacctggcagccaatgaacaagcaggaccaataaacagagagatgcgacatttaattagc
agtcttcaaaaccacaaccttcagctaaagggggatgtgcagcgatacaagaggaagctg
cgagaaacacagatggagataaataaggtagacgatgattggttttcatttttgacaggt
tgttgcaactatttattaaaaatatcaatgattcttaaaaaattggttttgtttccctcc
cagctacgttgtcaaagtggagaaactggagttttaattcttgaagaggccacaagcgat
ggcgtggaagtgaaaaaagaggaggatgacgaccaggaggaagaggaggagaggaggaag
gagctcgagagacagcgggcccgggagagagagagggagagggaggctgaacgggagcga
gagaaggaacgcgagagagataggcagcgcagcgacgagttaaagaggaaggactcggac
acgctgaagatgctccgaatagaactcaagaaagctcaggaatcccagaaggagatgaag
ctcctgctcgacatgtataaatctgctccaaaggagcaaagagacaaagtgcagctgatg
gcggcggagcgcaaatctaaagcagaggtggaagacttcaggatgcgagtgcgagagctg
gaggagagggagaggaaagaaagcaagaagctggctgatgaagatgccctcaggaagatc
cgcgtggctgaagaaactattgagcatctacagaagaaacttgctgcaactaagcaggag
gaggaggctttgctcagtgagatggatgtaactggacaggcctttgaggacatgcaggag
cagaacagccggctgctgcagcagctacgggagaaggacgatgccaacttcaagctgatg
agtgagcggatcaaatccaatcagatctacaaactgctgaaggaggagaaggaggaactg
gctgaccaagttctcaccttcaaaacccaggtggacgcccagctgctggttgtgcagaag
ctggaagaaaaagagggagtcctgcagagcacactggctgctttggagaaggagcttggt
gtcagaacacaagcgcttgagctcaacaagaggaaggcggtggaggccgctcagctggca
gaagatttgaaagtgcagctggagcacactcaggccaagctgaaggagattcaggtctct
gtggcggagaaccgcaccgcccgcgaaagagagagcagcaaccttaagcgggcgcaggaa
gatctatccagactaagacggaagcttgagaagcagaagaaggtggaggtatactctgat
gcagatgagatcctacaggaggagatcaatcagtacaaggcgaagctgcgctgcccctgc
tgcaacacgcgagacaaggagacggtcctcaccaagtgtttccacgttttctgttacgaa
tgtctgaagatgcgttacgacacccgacagaggaagtgccccaagtgcaactgtgccttc
ggagccaatgactttcaccgcatttacatcacctaa
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integrated database retrieval system
