Oryzias latipes (Japanese medaka): 101166780
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Entry
101166780 CDS
T02443
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03020
RNA polymerase
ola03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
101166780 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
101166780 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ola03021
]
101166780 (polr2b)
03400 DNA repair and recombination proteins [BR:
ola03400
]
101166780 (polr2b)
Enzymes [BR:
ola01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
101166780 (polr2b)
Transcription machinery [BR:
ola03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
101166780 (polr2b)
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
101166780 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
101166780
NCBI-ProteinID:
XP_023815312
UniProt:
H2N223
A0A3P9KH43
LinkDB
All DBs
Position
10:complement(3841524..3854742)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDNQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRFLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNKRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLIRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaccaggacgaagataaccagtatgatgaagacgatgatgaaatcaccccagat
ctgtggcaggaagcatgctggatcgtcatcagctcgtacttcgatgagaagggtttggtg
cggcagcagctggactccttcgatgagttcatccagatgtccgtgcagaggattgtggag
gacgcgcctcccatcgacctgcaggctgaagcacagcacacgtcaggggaggtggaggag
ccgcctcggttcctgctgaagtttgagcagatctacctgtccaagcccacccactgggag
agagacggagcgccctcccccatgatgcccaacgaggcgcggctgcgaaacctcacgtac
tcggcccccctttatgtggacatcacgaagaccatcattaaggagggggaggaccagcta
cagacgcagcaccagaagaccttcatcgggaaaatacccatcatgctccgctccacctat
tgtctgctgagcggcctgaccgaccgagatctgtgtgagcttaacgagtgtccgctggat
cccggaggctacttcatcatcaacggctcagagaaggtgctgatcgcgcaggagaagatg
gccaccaacaccgtctacgtctttgccaaaaaggactcaaagtacgcctacacggcagag
tgtcggtcctgtctggagaactcctctcggcccaccagcaccatctgggtcagcatgatg
gccaggggtggacagggagtcaagaagagcgccatcggccagaggatcgtctccacgctg
ccgtatatcagacaggaagttcccatcatcatcgtgtttcgagctctgggcttcgtgtct
gacagagacatcctggaacacatcatctacgactttgatgaccccgagatgatggagatg
gtgaagccttctctggatgaagcctttgtgatccaggagcagaatgtggcgctgaacttc
atcggttccagaggagccaagccaggagtcaccaaagagcggagaatcaaatacgcaaaa
gaggttttacagaaagagatgctgccgcacgttggagtcagcgacttctgtgagaccaag
aaggcctacttcttagggtacatggtccacaggctgctgctggctgccctgggcagacga
gagctggatgacagagatcactacggaaacaagagactggacctggctgggccgctgctg
gccttcctgttcagaggcatgttcaaaaacctgctgaaggagatcaggatttacgctcag
aagttcatcgacagaggaaaggactttaatctcgagctcgccattaagactcgcatcatc
tcggatggactcaaatactctctggccaccggaaactggggggacgtgaagaaagcccac
caggctcgggccggtgtgtcgcaggtgctgaaccgcctcaccttcgcctccacgctgtcc
cacctccgcagagtcaactctcccatcggcagagacggaaagctggccaagcccaggcag
ctgcacaacaccctgtgggggatggtgtgtccggctgagactccagagggtcatgctgtg
ggtctggtgaagaacttggccctcatggcctacatctctgtgggctcccaaccgtccccc
atcctggagttcttggaggagtggagcatggagaacctggaggagatctcacctgccgcc
attgctgatgcaacaaagatctttgtgaacggctgctgggtcggaatccacaaagatcct
gagcagctgatgaacactctgagaaagctgcgcagacagatggacatcatcgtctccgag
gtatcaatgattcgagacattcgagagcgtgagatcaggatttacacggacgctggtcgg
atctgcaggccgctccttatcgtggagaagcagaaacttctgctgaagagacgccacatt
gaccaactgaaggagagagagtacaacaactacagctggcaggacttggtggcgagtggc
gtggtggagtacatcgacacgctggaggaggagacggtcatgctggcgatgactcccgat
gacctccaggagaagggcgtggcctactgctccacctacacccactgtgagatccacccc
tctatgatcctgggagtctgcgcgtccatcatcccgttccccgaccacaaccagtctccc
aggaacacgtaccaatctgccatgggtaaacaggccatgggtgtgtacatcaccaacttt
cacgtgcgcatggacacactggcgcacgtgttgtactaccctcagaaaccgctggtcact
actcgatccatggagtacctgcgcttcagagagctgcctgcaggaatcaactcaattgtt
gctatagcctcgtacacgggatacaaccaggaggactctgtcatcatgaacagatctgct
gtggaccggggcttcttcaggtctgttttctatcgttcttacaaagagcaggagtctaag
aaaggcttcgaccaggaggagatctttgagaaacccacccgcgaaacctgccagggtatg
aggcatgccatctatgacaaactggacgatgacggactcatcgcgcccggcgttcgtgtg
tccggcgaagacgtgatcatcggaaagacggtaactctgccagaaaacgacgatgagctc
gacagcaccaacaagcgctacaccaagagggactgcagcaccttcctgagaacaagtgag
actggcattgtggaccaggtcatggtgaccctgaaccaggaggggtacaagttctgtaag
atcagggtgcgttctgtgcggatccctcagatcggggataagtttgccagtcgacatggg
cagaaaggaacctgtggcattcagtacagacaggaggacatgccattcacctgtgagggg
atcacgcctgacatcatcatcaacccccacgccattccgtccagaatgacagttggtcat
ctgatcgagtgtctgcagggcaaggtttctgccaacaaaggggagattggagacgccact
ccgttcaacgacgccgtcaacgttcagaaggtttcaaacctgctctctgagtacggatac
cacctgagaggaaacgaggttctgtacaacggcttcactggaaggaagctgacctctcag
atcttcatcgggcccacctattaccagagactgaagcacatggtggacgataagatccac
tccagggcccggggcccggtccagattctcaacaggcagcccatggagggccgctctcgg
gacggcggcctgcgcttcggcgagatggagcgtgattgtcaaattgctcacggagctgct
cagttcctgaaagagcgtctgtttgaagcctcagacccgtatcaggtccacgtgtgcaac
ctgtgtgggttgatggccatcgccaacacccggacgcacacgtacgagtgccgcggctgc
cgcaacaagactcagatctctctgatccggatgccgtacgcctgcaagttgctcttccag
gaactaatgtcaatgagcatcgctcctcgcatgatgacatcatag
DBGET
integrated database retrieval system
